Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq2232 113 3e-20 seq2078 111 1e-19 >seq2232 Length=20840 Score = 113 bits (124), Expect = 3e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| || || |||||||| ||||| || | || || | || || Sbjct 761 ACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCAGAAAGAGAACGGCCATCTTCT 820 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | || || || |||||||| | ||| || || |||| || | ||||||||| || Sbjct 821 AATTGTTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGGGGATACCTTCCTTGTCTTGG 880 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||||| | |||| | |||| ||||| |||||| || |||| || || ||||| Sbjct 881 ATCTTTTGCTTGAC-GTTCTCAATGGAGTCGGAGGATTCGACTTCCAAAGTGATGGTCTT 939 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || ||||||||||| ||||| ||||||||| Sbjct 940 ACCAGTGAGGGTCTTAACGAAAATTTGCATG 970 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| ||| |||||| ||||||||||| || | ||| || |||| ||| Sbjct 533 ACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGAACGGCCGTCTTCC 592 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | |||||| || || || || | ||| || || |||| ||| | |||||||| || Sbjct 593 AACTGCTTACCAGCGAAAATGAGACGTTGTTGGTCTGGAGGRATGCCTTCCTTGTCTTGG 652 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| | || | || | || | ||||| ||||| | || || || || Sbjct 653 ATCTTTTGCTTTACATTTTCGATAGAATCAGATGATTCAACCTCTAAGGTGATGGTTTTG 712 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || ||||| || ||||||||||| Sbjct 713 CCAGTAAGAGTCTTGACAAAGATTTGCAT 741 >seq2078 Length=27221 Score = 111 bits (122), Expect = 1e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||| || | | |||||| || || || || || ||||||||||| Sbjct 1279 TTGCATACCACCTCTAAGACGAAGCACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTA 1338 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | | ||| | || || || ||||| || || || |||||||| || ||||| Sbjct 1339 GTCTGATAAAGAGCGGCCATCTTCTAGTTGCTTTCCTGCGAAAATCAAACGTTGTTGATC 1398 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || || | ||||||||| || ||||| ||||| | || | || | || | ||| Sbjct 1399 TGGTGGAATACCTTCCTTGTCTTGAATCTTTTGCTTAACGTTTTCAATTGAATCAGAGGA 1458 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || | ||||| || || || ||||||||||| ||||| |||||||| Sbjct 1459 TTCAACTTCAAGGGTAATGGTTTTACCAGTGAGGGTCTTGACGAAAATTTGCAT 1512 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 |||||| || || || || || ||||||||||| || | || ||| | || || Sbjct 1075 CACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTAGTCTGATAGAGAGCGACCATCTTC 1134 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 | || || |||||||| || | |||||| || |||| || | |||||| || || Sbjct 1135 TAATTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCTGGTGGAATACCTTCTTTATCTTG 1194 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||||| | || | || | || | |||||| || || | || || || || Sbjct 1195 AATCTTTTGCTTGACGTTTTCAATAGAATCAGAGGATTCGACTTCTAGTGTGATTGTTTT 1254 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| |||||||| ||||||||||| Sbjct 1255 GCCTGTGAGTGTCTTCACAAAGATTTGCAT 1284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359978053904238