Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq2193 143 4e-29 seq1181 87.8 2e-12 >seq2193 Length=22042 Score = 143 bits (158), Expect = 4e-29 Identities = 264/388 (68%), Gaps = 18/388 (5%) Strand=Plus/Minus Query 50473 AAGGAGATTTAGGACCTGTTTACGGTTTTCAATGGAGACATTTTGGAGCGCGTTACATAA 50532 |||| ||| | |||||||| || |||||||||||| | || || || ||| || || Sbjct 3415 AAGGTGATCTCGGACCTGTATATGGTTTTCAATGGCGTCACTTCGGTGCGAAATATGTAG 3356 Query 50533 ATTGCGACGTAAATTACGAAGGTCAAGGCGTGGATCAACTGCAAAAAATTATAACGACGT 50592 ||||||| | |||| |||||||||||| ||||| || || || |||| ||| Sbjct 3355 ATTGCGATACAGATTATACAGGTCAAGGCGTTGATCAGCTTCAGCAAGTTATTGATACGA 3296 Query 50593 TGAAAACAAACCCCGACGATCGGCGTATTTTAATGACCGCCTGGAATCCAACCGATATAG 50652 | || | ||||| |||||| |||||| | ||| ||||||||||| | ||||| Sbjct 3295 TTAAGAACAACCCAACCGATCGCCGTATTATTTTGAGTGCCTGGAATCCTGCTGATATTC 3236 Query 50653 ATCAAACCGTTTTACCTCCGTGTCATGTTTTATGTCAATTTTATG---CCACA---GACA 50706 | | | ||||||||| |||||| || |||||||| |||| | ||| || Sbjct 3235 CTATCATGGCTTTACCTCCTTGTCATTCATTCTGTCAATTCTATGTCTCTACACCTATCA 3176 Query 50707 ATGTT------------TTATCCTGTCAATGTTATCAAAGATCAGCTGATATGGGTTTAG 50754 ||| | || |||||| || |||||||||||| ||||||||| ||| Sbjct 3175 ATGGTGAGCCTGCTAAGTTGTCCTGTGTATTATATCAAAGATCATGTGATATGGGACTAG 3116 Query 50755 GCGTTCCTTTCAACGTAGCTTCTTACGCTTTATTAACGTATTTGATCGCTCAAGCCGTCG 50814 | || || || ||| | || ||||| ||| | ||||| |||| || || | | Sbjct 3115 GTGTGCCATTTAACATTGCCTCTTATGCTCTTTTAACTCGAATGATTGCCCATGTAACTG 3056 Query 50815 ATATGAAACCGGGAGAATTTATTCATAC 50842 || || | || ||||||||||| ||||| Sbjct 3055 ATTTGGAGCCTGGAGAATTTATACATAC 3028 >seq1181 Length=33965 Score = 87.8 bits (96), Expect = 2e-12 Identities = 176/261 (67%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 155774 TTCAGCGCCGCTGTAATTTTTAGTTTCAACGGCTATTTTATTTAAGTCTACGTCGGAAGC 155833 ||||||||| |||||||| || ||| |||| | | || || | || ||| | | Sbjct 27781 TTCAGCGCCACTGTAATTCTTTGTTAATTCGGCCAAATCATCCAAATTGACATCGTCATC 27840 Query 155834 TAATATGTTGTGAGATTTCATTTTAGCAACGTGCACCTTTAAAATTTGAAGACGCCCCTT 155893 ||| | | | | | ||||||| || ||| | ||| | ||| ||| |||| ||||| Sbjct 27841 TAAAACATCATTTGTTCTCATTTTGCCAGTGTGAATCTTGAGAATCTGATGACGACCCTT 27900 Query 155894 TTCATCGGGTAATCCAATTTCTATCTTCAATTCCAACCGCCCAGGTCTTAATAATGCTTC 155953 || || || | || ||||| || | | ||| | || ||||| | || | ||||| Sbjct 27901 CTCGTCAGGCAGACCGATTTCCATATGAACTTCAAGACGACCAGGACGCAAAAGAGCTTC 27960 Query 155954 GTCAATTAAGTCGGGTCTGTTGGTCATACCTATGATTAAAATGTTGTTTAAAGATTCTAC 156013 || || | || |||||| |||||||| || || ||||||||||| || ||| || Sbjct 27961 ATCGATCATATCCTTTCTGTTTGTCATACCAATAATCAAAATGTTGTTCAATTGTTCAAC 28020 Query 156014 ACCGTCTATTTTAGACAATAA 156034 ||| || || | | | ||||| Sbjct 28021 ACCATCCATCTAACAGAATAA 28041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667051735629840