Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2232 161 2e-34 seq2078 156 1e-32 seq1425 123 6e-23 >seq2232 Length=20840 Score = 161 bits (178), Expect = 2e-34 Identities = 169/220 (77%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 177912 GTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTG 177971 ||||| |||| |||||||||| || || ||||| || || || ||||| | || || Sbjct 975 GTTAACATGC---AAATTTTCGTTAAGACCCTCACTGGTAAGACCATCACTTTGGAAGTC 919 Query 177972 GAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCT 178031 ||| ||| ||| |||| ||||||||||| |||||||| || ||||| ||||| ||||| Sbjct 918 GAATCCTCCGACTCCATTGAGAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCC 859 Query 178032 CCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCC 178091 || ||||| ||||| |||||||| || || ||||| | |||||||| | ||||| | Sbjct 858 CCAGACCAACAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGCCGTTCTCTTTCT 799 Query 178092 GATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTT 178131 || || || ||||||||||||| || || || |||| || Sbjct 798 GACTACAATATCCAAAAAGAATCTACCCTTCA-CTTGGTT 760 Score = 145 bits (160), Expect = 2e-29 Identities = 157/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || ||||| || || || || || || | || || ||| ||| ||| Sbjct 510 CAGATTTTYGTTAAGACTCTTACTGGCAAGACTATKACTTTGGAAGTCGAATCCTCCGAC 451 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||| ||||||||||| |||||||| || ||||| ||||| || || || ||||| ||| Sbjct 450 TCCATTGAGAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATYCCCCCAGACCAACAA 391 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || || ||||| | |||||||| | ||||| | || || || || Sbjct 390 CGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGCCGTTCTCTTTCTGACTACAATATC 331 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 ||||||||||| || || || |||| || Sbjct 330 CAAAAAGAATCTACCCTTCA-CTTGGTT 304 >seq2078 Length=27221 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||| || |||||||| ||||| ||||| || || || ||| ||| || Sbjct 1281 CAAATCTTTGTGAAGACACTCACAGGCAAAACAATCACACTAGAAGTCGAATCCTCTGAT 1222 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || |||||||| ||||||||||| || |||||||| || || || ||||| || Sbjct 1221 TCTATTGAAAACGTCAAGCAAAAGATTCAAGATAAAGAAGGTATTCCACCAGACCAACAG 1162 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| || ||||| ||||| | |||||||| | |||| | || || ||| || Sbjct 1161 CGTCTTATTTTTGCCGGCAAACAATTAGAAGATGGTCGCTCTCTATCAGACTACAACATC 1102 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || |||||||| ||||| ||||| || Sbjct 1101 CAGAAAGAATCTACACTACATCTGGT 1076 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || ||||| || ||||| || ||||| || || ||| ||| || Sbjct 1509 CAAATTTTCGTCAAGACCCTCACTGGTAAAACCATTACCCTTGAAGTTGAATCCTCTGAT 1450 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || ||||| || ||||||||||| ||||| ||||| || || || || || ||| Sbjct 1449 TCAATTGAAAACGTTAAGCAAAAGATTCAAGACAAGGAAGGTATTCCACCAGATCAACAA 1390 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| ||||| || || |||||||| | || | | || || ||| || Sbjct 1389 CGTTTGATTTTCGCAGGAAAGCAACTAGAAGATGGCCGCTCTTTATCAGACTACAACATC 1330 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || |||||||| ||||| ||||| || Sbjct 1329 CAGAAAGAATCTACACTACATCTGGT 1304 >seq1425 Length=32788 Score = 123 bits (136), Expect = 6e-23 Identities = 122/157 (78%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||||| |||||||| || || ||||| ||||||||||| ||||| ||||| || || || Sbjct 31355 AGCTCTGACACCATTGACAATGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCCCCA 31296 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 ||||| ||||| |||||||| || || || || | |||||||| | ||||| | || Sbjct 31295 GACCAACAACGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGTTCTCTTTCYGAC 31236 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTT 178131 || ||| ||||||| ||||| || || || |||| || Sbjct 31235 TACAACATCCAAAAGGAATCTACCCTTCA-CTTGGTT 31200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203687800223916