Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq33 129 1e-24 seq77 109 1e-18 seq84 107 4e-18 >seq33 Length=455653 Score = 129 bits (142), Expect = 1e-24 Identities = 150/201 (75%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 230440 TGTCGC-CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGA 230498 |||||| || |||||||||||| | | || ||| | || ||||| ||||| || || || Sbjct 390974 TGTCGCGCTCATTGGCATGAACTCCAAGCTCATGTGCCAATACATTGAATTTGTTGCGGA 390915 Query 230499 CCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATT 230558 |||| | | ||||| ||||| | || || ||||| | | || ||||||| || Sbjct 390914 CCGCCTGCTCGTTGCTCTTGGCCAGGACAAGCACTACAAGGCAACCAATCCCTTTGACTT 390855 Query 230559 TATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTA 230618 |||||| ||||| ||||| || || |||||||| ||||| || ||||||||| |||||| Sbjct 390854 TATGGACCTCATCTCGCTCCAGGGCAAGACCAATTTCTTTGAGAAGCGTGTCTCTGACTA 390795 Query 230619 TCAGAGGCCTGGTGTGATGAA 230639 ||| | |||| || ||||| Sbjct 390794 CCAGCGTGCTGGCGTCATGAA 390774 >seq77 Length=108250 Score = 109 bits (120), Expect = 1e-18 Identities = 188/271 (69%), Gaps = 4/271 (1%) Strand=Plus/Plus Query 318850 ACCTCGTACTCGTAAGATTTTTTCAGCTTGCGGCGACCAAGAATCTTGTCAAGAATTTTC 318909 |||||||||||||| |||| || |||||||||||||| | | | ||| | | | Sbjct 88472 ACCTCGTACTCGTACGATTGCTTGAGCTTGCGGCGACCCACCAATTCGTCCACGACGCGC 88531 Query 318910 TTCACTCCGTCAACGACTTTAGTGTCATA--CATCTTCTTTAGTTCTTCTTCGTTGTTCT 318967 ||| | || |||| || | | | | | ||||| |||| |||||| || || | Sbjct 88532 TTCTCGCCTTCAATGA--TGAATTCCTTGGTCATCTGCTTTTCTTCTTCCTCAGTGATGA 88589 Query 318968 TCCTAGAAACGACGTCAAGGGTCTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATAT 319027 | | | || || || ||| ||| || || | ||||| ||||||||||| | Sbjct 88590 TGCGATCCACCTTTTCCAGCTCCTCACGGTCCTCGCCTGTCGCATAGCGCCATTGGATGT 88649 Query 319028 ACTGGTTGGGTGTCATGTCAAGATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGT 319087 ||| |||||| || |||| || || | || ||||| ||||| || ||||| ||||||| Sbjct 88650 ACTCGTTGGGCGTGCTGTCCAGGTGCTTTTCAATGTGATGGAACGCGTGCTGCGCCACGT 88709 Query 319088 AAGCAAGACGCATATTTGGATGCTTCCAAAC 319118 | |||| |||| ||| ||||||||||| || Sbjct 88710 ACGCAATGCGCAAATTCGGATGCTTCCACAC 88740 >seq84 Length=91516 Score = 107 bits (118), Expect = 4e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 318997 TCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATCC 319056 |||||||||| |||||| ||||||||||| |||| |||||| || ||||| | || | | Sbjct 51167 TCTTCACCGGTGGCATAGCGCCATTGGATGTACTCGTTGGGGGTGATGTCCAAGTGCTTC 51226 Query 319057 TCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAA 319116 || || |||||||| || ||||| || || || |||| ||||| || || |||||||| Sbjct 51227 TCAATATGGTGGAAGGCGTGCTGGGCGACATAGGCAATACGCAAGTTGGGGTGCTTCCAG 51286 Query 319117 AC 319118 || Sbjct 51287 AC 51288 Score = 96.9 bits (106), Expect = 7e-15 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 318493 ACAACACCTCCGCCAAAGTTCTTAAGTGCTTCGGCCATTGCTCCGAGACTCTCGCGGTCA 318552 || ||||| |||||| | | ||| | || | || | || ||||| |||||| || Sbjct 50657 ACGACACCACCGCCATACTCCTTGATGGCACCAGCAAGGGCACCGAGGGACTCGCGATCC 50716 Query 318553 ACGAAGTTGGTCGGTTCGTCCAAAACGATCACGTG-GGGTTGTTGCCATAGAGCAGCGCC 318611 | | |||| || ||||||||||| || | || ||| || ||||| ||| | || || || Sbjct 50717 AAGTAGTTAGTAGGTTCGTCCAAGACCAACATGTGAGGCTTGTT-CCACATGGCGGCACC 50775 Query 318612 AATAACCAATTTCAGCTTTTGCCCGCCAGATAGACCACGAATGCGAGAATGAGTTGTAAA 318671 ||| || | || | |||||| || || || |||||||| ||||| || ||||| | || Sbjct 50776 AATGACGAGCTTGACCTTTTGACCACCGGACAGACCACGGATGCGGGAGTGAGTGGCGAA 50835 Query 318672 TTCAGGGTCGAGCCCAA 318688 || || ||||| |||| Sbjct 50836 CTCGGGCTCGAGACCAA 50852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057821980547870