Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq30 140 3e-28 seq45 125 6e-24 seq56 98.7 8e-16 seq1 86.0 5e-12 >seq30 Length=460931 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| ||||| |||||||||||||||||||| ||||| | Sbjct 195746 CCACCACGGAGACGGAGCACCAAATGCAGCGTGGACTCCTTTTGAATGTTGTAGTCAGAG 195805 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || |||| |||| || ||||| || |||| || | ||||||||| ||| Sbjct 195806 AGCGTGCGGCCGTCTTCCAATTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGGGGA 195865 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||||| || || | | ||| | ||| | || | Sbjct 195866 ATGCCTTCCTTGTCTTGAATCTTTTGCTTGACATTGTCGATCGAATCGGACGATTCGACT 195925 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || ||||||||||| || | ||| |||||||| |||||||| Sbjct 195926 TCCAAAGTGATGGTCTTGCCAGTGAGCGTCTTGACAAAGATTTGCAT 195972 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| ||||| |||||||||||||| ||||| ||||| | | Sbjct 196202 CCACCACGGAGACGGAGCACCAAGTGCAACGTGGACTCCTTTTGGATGTTGTAGTCAGAC 196261 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||| ||||| ||||| ||| | ||||| | ||||||||| ||| Sbjct 196262 AGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCGGGGGGA 196321 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||||| || || | | | | || || | ||| Sbjct 196322 ATACCCTCCTTGTCTTGAATCTTTTGCTTGACATTGTCAATAGAGTCCGACGACTCGACC 196381 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 |||| || ||||||||||| || | || ||||| || |||||||| ||| Sbjct 196382 TCCAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAAATTTGCATGTTG 196432 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| |||||||| ||||| ||||| | ||| || || | ||||| ||||| ||||| Sbjct 195548 GTGGATTCCTTTTGGATGTTGTAGTCGGACAGCGTGCGGCCATCCTCGAGCTGCTTGCCG 195607 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | ||||| | ||||||||| || | ||||||||||| ||||||||| || Sbjct 195608 GCAAAGATAAGGCGCTGCTGGTCGGGAGGGATACCTTCCTTGTCCTGGATCTTTTGCTTG 195667 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| | ||| | ||| || | ||| ||||||||||| || || || Sbjct 195668 ACATTGTCGATGGAATCCGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGTCAAAGTC 195727 Query 21159 TTGACAAATATTTGCAT 21175 |||||||| || ||||| Sbjct 195728 TTGACAAAGATCTGCAT 195744 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | || || |||||||| ||||| || || | | Sbjct 195974 CCACCACGGAGACGGAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAATCAGAC 196033 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| || | || |||| || ||||| ||| | || || | ||||||||| || Sbjct 196034 AAGGTGCGGCCATCTTCCAATTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGAGGG 196093 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| ||||||||| || || | | | | ||| | ||| Sbjct 196094 ATGCCTTCCTTGTCCTGGATCTTTTGCTTGACATTATCAATGGAATCCGACGACTCGACC 196153 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||||||||| || || || || ||||| || ||||| Sbjct 196154 TCGAGCGTGATGGTCTTGCCAGTCAAAGTCTTAACAAAGATCTGCAT 196200 >seq45 Length=303593 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| ||||||||||||||| ||||| ||||| | ||| || || ||||| Sbjct 86639 AGAACCAAGTGCAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAGCGTGCGGCCGTCC 86580 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| |||| | | |||||| || ||| | ||| |||||||| Sbjct 86579 TCCAGCTGCTTGCCGGCAAAAATCAAACGCTGCTGATCGGGGGGAATGCCCTCCTTGTCT 86520 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||| || || || || | | ||| || ||| | ||| |||| || |||||| Sbjct 86519 TGGATTTTCTGCTTGACGTTGTCGATAGAATCGGACGACTCGACCTCCAGAGTGATGGTC 86460 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || ||||| || |||||||| Sbjct 86459 TTGCCAGTGAGAGTCTTGACGAAAATTTGCAT 86428 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||| |||| || | ||||| |||||||| ||||| ||||| | Sbjct 86882 CCACCGCGCAGACGGAGGACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCAGAG 86823 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||| ||||| ||||| || |||| || | ||||||||| || Sbjct 86822 AGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGAGGG 86763 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| ||||||||| || || | | ||| | ||| | |||| Sbjct 86762 ATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTGTCGATGGAATCGGACGACTCCACC 86703 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| ||||||||||| || | ||| ||||| || || ||||| Sbjct 86702 TCCAAGGTGATGGTCTTGCCAGTGAGCGTCTTGACGAAAATCTGCAT 86656 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| ||||| ||||| ||||| || ||||| || || | | Sbjct 87338 CCACCACGGAGACGGAGGACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAATCAGAC 87279 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| || |||| |||| || ||||| ||| | || || | ||||||||| ||| Sbjct 87278 AAGGTGCGGCCGTCTTCCAATTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGGA 87219 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| ||||||||| || || | | ||| | || | || Sbjct 87218 ATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTGTCGATGGAGTCGGACGATTCGACC 87159 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || |||||||||||||| || || |||||||| || ||||| Sbjct 87158 TCCAAAGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 87112 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 ||| || || || || | ||| |||| || | ||||| |||||||| ||||| ||||| Sbjct 87570 GTTGCCGCCACGGAGACGGAGGACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTC 87511 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 | || || || |||| |||| |||||||| ||| | || || | ||| ||||| Sbjct 87510 GGAAAGCGTGCGGCCGTCTTCCAATTGTTTGCCGGCAAAGATGAGGCGCTGTTGGTCGGG 87451 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 || | |||||||||||| ||||||||| || || | | ||| | ||| | || Sbjct 87450 AGGGATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTGTCGATGGAATCGGACGATTC 87391 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || |||||||||||||| || || |||||||| || ||||| Sbjct 87390 GACCTCCAAAGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 87340 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||| |||| || | ||||| |||||||||||||| ||||| | Sbjct 87110 CCACCGCGCAGGCGGAGAACCAAGTGGAGCGTGGATTCCTTTTGAATGTTGTAGTCAGAG 87051 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||||| || ||||| || |||| | | ||||||||| || Sbjct 87050 AGCGTGCGGCCATCCTCCAATTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGG 86991 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| || || || || || | | | | | || | |||| Sbjct 86990 ATGCCTTCCTTGTCTTGAATTTTCTGCTTGACATTGTCAATGGAGTCGGACGACTCCACC 86931 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||||||||| || | ||| ||||| || |||||||| Sbjct 86930 TCGAGTGTGATGGTCTTGCCAGTGAGCGTCTTGACGAAGATTTGCAT 86884 >seq56 Length=224513 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| ||||| || ||||||||||| ||||| || |||| ||| || || | ||| Sbjct 32442 AGCACCAGGTGCAACGTCGACTCCTTTTGGATGTTGTAATCCGACAGCGTGCGGCCATCC 32501 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||| || ||||| ||| | || |||| ||||| || || | || |||||||| Sbjct 32502 TCCAATTGCTTGCCGGCAAAGATGAGTCGTTGCTGATCAGGCGGAATACCCTCCTTGTCT 32561 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||||||| ||||| | | | | ||| | || || | || |||||| Sbjct 32562 TGGATCTTTTGCTTCACATTATCAATTGAATCCGACGATTCAACCTCAAGTGTGATGGTC 32621 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | ||| ||||| || |||||||| Sbjct 32622 TTGCCAGTGAGCGTCTTGACGAAGATTTGCAT 32653 >seq1 Length=1252801 Score = 86.0 bits (94), Expect = 5e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | ||||||||||| || ||||| ||||| | | Sbjct 333506 CCACCACGGAGACGGAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 333565 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| || |||| |||| ||| ||||| || | || | | ||||||||| ||| Sbjct 333566 AAGGTGCGGCCGTCTTCCAACTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGA 333625 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCAC 21100 | ||||||||||| ||||||||| || || Sbjct 333626 ATACCTTCCTTGTCTTGGATCTTTTGCTTGAC 333657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422258433203684