Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq33 165 8e-36 seq30 140 3e-28 seq45 127 2e-24 seq56 125 7e-24 seq1 98.7 1e-15 seq94 82.4 8e-11 >seq33 Length=455653 Score = 165 bits (182), Expect = 8e-36 Identities = 309/448 (69%), Gaps = 7/448 (2%) Strand=Plus/Minus Query 116984 AAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTG 117043 |||||||| ||||| | ||||||||| | ||| | | | || | ||||||||| Sbjct 391282 AAGGCCGACTGGGCATTCCGCTGGATCTCGAGCAACAA---CACGTTTGCCGAGCGCCTT 391226 Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103 || || || ||||| || |||||| | ||||| || || || || |||| |||||| Sbjct 391225 GTTGCTTTTGCGGCGGTTGAGGGCATTTTCTTCTCTGGTGCGTTTGCGTCCATCTTTTGG 391166 Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGAC 117163 |||||||| |||||| | ||||| ||| |||| ||| ||||||||| || | | | ||| Sbjct 391165 CTCAAGAAGCGCGGCTTGATGCCTGGCTTGACGTTCTCCAACGAGCTGATTTGCCGTGAC 391106 Query 117164 GAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGC-GACCGAG 117222 |||||| |||| |||||||| || |||| || ||| | | ||| | || Sbjct 391105 GAGGGTTTGCACACGGACTTTGCGTGCCTGCTCTTTGGCCATCT-GCGCAACACGCCTTC 391047 Query 117223 CGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCAC 117282 | | || || | || ||| ||||||| || ||| || ||||| ||||| || Sbjct 391046 CAATGACCGTGTGCGCGATATCATCACCGAGGCCGTCAAGATTGAGCAAGAATTCCTGAC 390987 Query 117283 CGAAGCGCTGCCGGT-GCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCG 117341 ||| |||||||| || ||| || | || | || | | | |||| |||||||| | Sbjct 390986 CGACGCGCTGCCTGTCGCG-CTCATTGGCATGAACTCCAAGCTCATGTGCCAATACATTG 390928 Query 117342 AGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCA 117401 | || || || ||| | ||||| | | || | | | |||||||||||| | ||| Sbjct 390927 AATTTGTTGCGGACCGCCTGCTCGTTGCTCTTGGCCAGGACAAGCACTACAAGGCAACCA 390868 Query 117402 ACCCGCTGGACTTTATGAACCTCATCTC 117429 | || | ||||||||| |||||||||| Sbjct 390867 ATCCCTTTGACTTTATGGACCTCATCTC 390840 Score = 107 bits (118), Expect = 2e-18 Identities = 171/245 (70%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 116648 TACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACG 116707 ||||||||||| |||||||| || ||||| | ||||||| | || |||||||||||| Sbjct 391692 TACAAAAAGGCAGAGGCGTCCTTTTGGACGGCCGAGGAGATTGATCTGTCCAAGGACCTT 391633 Query 116708 AGCGACTGGGAGCGC---TTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCC 116764 | ||||||||| | ||| | |||||||| | ||||| |||| | ||||| Sbjct 391632 GGTGACTGGGAGAACAAGATGACTGCTGACGAGCGCTACTTCATTTCGCACATTCTGGCG 391573 Query 116765 TTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAG 116824 || || || | || ||||| ||||||||||| |||| | ||| | ||| Sbjct 391572 TTCTTTGCAAGCTCGGATGGCATTGTCAACGAGAACTTGGTGCAAAACTTCATGGACGAG 391513 Query 116825 GTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCAC 116884 || || | |||||||| |||||| || ||||| || ||| || ||||| | ||| Sbjct 391512 GTCAAGATTGCCGAGGCAAAGTGCTTTTATGGCTTCCAAATCATGATTGAGAATATCCAC 391453 Query 116885 TCGGA 116889 || || Sbjct 391452 TCCGA 391448 >seq30 Length=460931 Score = 140 bits (154), Expect = 3e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || |||||||| ||||| |||||||| | || |||||| | || Sbjct 195972 ATGCAAATCTTTGTCAAGACGCTCACTGGCAAGACCATCACTTTGGAAGTCGAATCGTCC 195913 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | ||||| |||| |||| ||||| || ||||| ||| | |||||| Sbjct 195912 GATTCGATCGACAATGTCAAGCAAAAGATTCAAGACAAGGAAGGCATTCCCCCTGACCAG 195853 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||| | ||| ||||| || |||| |||| ||||| ||| ||||||||| Sbjct 195852 CAGCGCCTCATTTTCGCCGGCAAGCAATTGGAAGACGGCCGCACGCTCTCTGACTACAAC 195793 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 || || |||||| ||||||||||| | ||| Sbjct 195792 ATTCAAAAGGAGTCCACGCTGCATTTGGTG 195763 Score = 123 bits (136), Expect = 3e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || |||||||| ||||| || || ||||| ||||| |||||||| | || ||||| | Sbjct 196431 AACATGCAAATTTTCGTCAAGACTCTCACTGGCAAGACCATCACTCTGGAGGTCGAGTCG 196372 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | ||| | | | ||||| |||| |||| ||||| ||||| || ||| | ||| Sbjct 196371 TCGGACTCTATTGACAATGTCAAGCAAAAGATTCAAGACAAGGAGGGTATTCCCCCCGAC 196312 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| || ||||| ||||| || || | ||||| || |||||| Sbjct 196311 CAGCAGCGCCTTATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTGTCTGACTAC 196252 Query 40867 AACATCCAGAAGGAGGCCACGCTGCA 40892 |||||||| |||||| ||||| |||| Sbjct 196251 AACATCCAAAAGGAGTCCACGTTGCA 196226 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || ||||| ||||||||| |||| ||||| | | Sbjct 195744 ATGCAGATCTTTGTCAAGACTTTGACTGGCAAGACCATCACCCTCGAGGTCGAGTCGTCG 195685 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | ||||| |||| || | ||||| || || ||||| | |||||| Sbjct 195684 GATTCCATCGACAATGTCAAGCAAAAGATCCAGGACAAGGAAGGTATCCCTCCCGACCAG 195625 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || ||||| ||||| || || | ||||| || |||||||||| Sbjct 195624 CAGCGCCTTATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTGTCCGACTACAAC 195565 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 ||||| ||||| ||||||| || Sbjct 195564 ATCCAAAAGGAATCCACGCTCCA 195542 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || ||||| |||||||| |||| ||||| | | Sbjct 196200 ATGCAGATCTTTGTTAAGACTTTGACTGGCAAGACCATCACGCTCGAGGTCGAGTCGTCG 196141 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | ||||| |||| || | ||||| || |||||||| | |||||| Sbjct 196140 GATTCCATTGATAATGTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCTCCCGACCAG 196081 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| || ||||| || |||| || | |||||| | || |||||| Sbjct 196080 CAGCGCCTCATCTTTGCCGGCAAGCAATTGGAAGATGGCCGCACCTTGTCTGATTACAAC 196021 Query 40870 ATCCAGAAGGA 40880 ||||| ||||| Sbjct 196020 ATCCAAAAGGA 196010 >seq45 Length=303593 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || |||||||| ||||| ||||||||| | || || || | || Sbjct 86656 ATGCAGATTTTCGTCAAGACGCTCACTGGCAAGACCATCACCTTGGAGGTGGAGTCGTCC 86715 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | ||||| |||| || | ||||| || |||||||| | |||||| Sbjct 86716 GATTCCATCGACAATGTCAAGCAAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAG 86775 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||| | ||| ||||| ||||| || || | ||||| ||| ||||||||| Sbjct 86776 CAGCGCCTCATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCTCTGACTACAAC 86835 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 ||||| ||||| ||||||| || Sbjct 86836 ATCCAAAAGGAATCCACGCTCCA 86858 Score = 123 bits (136), Expect = 3e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || |||||||| ||||| |||||||| |||| || || | || Sbjct 86884 ATGCAAATCTTCGTCAAGACGCTCACTGGCAAGACCATCACACTCGAGGTGGAGTCGTCC 86943 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | | | | ||||| | ||||||| ||||| || |||||||| | |||||| Sbjct 86944 GACTCCATTGACAATGTCAAGCAGAAAATTCAAGACAAGGAAGGCATCCCTCCTGACCAG 87003 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | || | ||| ||||| || |||| || | ||||| ||| ||||||||| Sbjct 87004 CAGCGTTTGATTTTCGCCGGCAAGCAATTGGAGGATGGCCGCACGCTCTCTGACTACAAC 87063 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 || || ||||| ||||||| || Sbjct 87064 ATTCAAAAGGAATCCACGCTCCA 87086 Score = 122 bits (134), Expect = 9e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||| |||||||| | || ||||| | || Sbjct 86428 ATGCAAATTTTCGTCAAGACTCTCACTGGCAAGACCATCACTCTGGAGGTCGAGTCGTCC 86487 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | |||| ||||| | ||||| | ||||| |||||||| ||| | || || Sbjct 86488 GATTCTATCGACAACG-TCAAGCAGAAAATCCAAGACAAGGAGGGCATTCCCCCCGATCA 86546 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | || | || ||||| |||||||| |||| ||||| || |||||||| Sbjct 86547 GCAGCGTTTGATTTTTGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGTCTGACTACAA 86606 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||| |||||| |||| ||||| Sbjct 86607 CATCCAAAAGGAGTCCACTCTGCA 86630 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || ||||| |||||||| | || |||||| | || Sbjct 87340 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACTTTGGAGGTCGAATCGTCC 87399 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | ||||| |||| || | ||||| || |||||||| | ||||| Sbjct 87400 GATTCCATCGACAATGTCAAGCAAAAGATCCAAGACAAGGAAGGCATCCCTCCCGACCAA 87459 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| || |||||||| |||| |||| ||||| || |||||||||| Sbjct 87460 CAGCGCCTCATCTTTGCCGGCAAACAATTGGAAGACGGCCGCACGCTTTCCGACTACAAC 87519 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 ||||| ||||| ||||||| || Sbjct 87520 ATCCAAAAGGAATCCACGCTCCA 87542 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || ||||| |||||||| | || |||||| | || Sbjct 87112 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACTTTGGAGGTCGAATCGTCC 87171 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | | | | ||||| |||| || | ||||| || ||||| ||| | |||||| Sbjct 87172 GACTCCATCGACAATGTCAAGCAAAAGATCCAAGACAAGGAAGGCATTCCCCCCGACCAG 87231 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| || ||||| || |||| |||| |||||| | || |||||| Sbjct 87232 CAGCGCCTCATCTTTGCCGGCAAGCAATTGGAAGACGGCCGCACCTTGTCTGATTACAAC 87291 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||| |||| |||| Sbjct 87292 ATCCAGAAGGAATCCACCTTGCA 87314 >seq56 Length=224513 Score = 125 bits (138), Expect = 7e-24 Identities = 168/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || |||||||| ||||| |||||||| | || || ||| | | Sbjct 32653 ATGCAAATCTTCGTCAAGACGCTCACTGGCAAGACCATCACACTTGAGGTTGAATCGTCG 32594 Query 40750 GA--CAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 || || || || | | ||| |||| || | ||||| ||||| || || | || | Sbjct 32593 GATTCAAT-TGATAATG-TGAAGCAAAAGATCCAAGACAAGGAGGGTATTCCGCCTGATC 32536 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||||||||||||||| || ||||| || |||| || | ||||| || || |||| Sbjct 32535 AGCAACGACTCATCTTTGCCGGCAAGCAATTGGAGGATGGCCGCACGCTGTCGGATTACA 32476 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||| |||||| | ||| |||| || ||| |||| ||| | |||||| Sbjct 32475 ACATCCAAAAGGAGTCGACGTTGCACCTGGTGCTGCGATTGCGCGGCGGC 32426 >seq1 Length=1252801 Score = 98.7 bits (108), Expect = 1e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 ||||| |||| || | ||||| || || || ||| | |||||||| || | |||| || Sbjct 333656 TCAAGCAAAAGATCCAAGACAAGGAAGGTATTCCCCCCGACCAGCAGCGCTTGATCTTCG 333597 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 | ||||| ||| |||| |||| |||||| | |||||||||||||||||||||| ||| Sbjct 333596 CTGGCAAGCAGTTGGAAGACGGCCGCACCTTGTCCGACTACAACATCCAGAAGGAGTCCA 333537 Query 40886 CGCTGCA 40892 | || || Sbjct 333536 CCCTCCA 333530 >seq94 Length=66050 Score = 82.4 bits (90), Expect = 8e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 ||||| |||| || | ||||| |||||||||||| | |||||||| || | |||| || Sbjct 22949 TCAAGCAAAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCTTGATCTTCG 22890 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880 | ||||| || |||| || | ||||| | |||||||||||||| ||||| Sbjct 22889 CCGGCAAGCAATTGGAAGATGGCCGCACGTTGTCTGACTACAACATCCAAAAGGA 22835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218240404240