Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq30 168 4e-37 seq45 161 6e-35 seq56 140 2e-28 seq1 100 2e-16 seq94 89.7 3e-13 >seq30 Length=460931 Score = 168 bits (186), Expect = 4e-37 Identities = 152/191 (80%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || || || ||||||||||| || ||| ||| |||| ||||| |||||||| |||||| Sbjct 195782 TCCTTTTGAATGTTGTAGTCAGAGAGCGTGCGGCCGTCTTCCAATTGCTTGCCGGCGAAA 195841 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| ||||||||||| ||| | || |||||||| ||||||||||| | || | Sbjct 195842 ATGAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGAATCTTTTGCTTGACATTG 195901 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | |||||||||| ||||||||| |||| |||||||| ||||| ||||| || || ||| Sbjct 195902 TCGATCGAATCGGACGATTCGACTTCCAAAGTGATGGTCTTGCCAGTGAGCGTCTTGACA 195961 Query 34379 AAGATCTGCAT 34389 ||||| ||||| Sbjct 195962 AAGATTTGCAT 195972 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | ||| |||| ||| | || ||| || || ||||||||||||||| Sbjct 195518 CCACCGCGGAGACGCAGGACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCGGAC 195577 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || || | ||||||||| || || || || |||||||||||| || Sbjct 195578 AGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCGGGAGGG 195637 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||||||||| | || | | || ||||| | ||| ||||| Sbjct 195638 ATACCTTCCTTGTCCTGGATCTTTTGCTTGACATTGTCGATGGAATCCGACGACTCGACC 195697 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| || | ||| || |||||||||||||| Sbjct 195698 TCGAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 195744 Score = 140 bits (154), Expect = 2e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| || || || || || ||||||||||| |||||| ||| | || Sbjct 196217 AGCACCAAGTGCAACGTGGACTCCTTTTGGATGTTGTAGTCAGACAGCGTGCGGCCATCC 196276 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| || || || || |||||||||||| ||| | | ||||||||| Sbjct 196277 TCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCT 196336 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||||||||| | || | | || || || | ||| ||||| |||| |||||||| Sbjct 196337 TGAATCTTTTGCTTGACATTGTCAATAGAGTCCGACGACTCGACCTCCAGAGTGATGGTC 196396 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| |||||||| || || || || ||||| Sbjct 196397 TTGCCAGTGAGAGTCTTGACGAAAATTTGCAT 196428 Score = 138 bits (152), Expect = 7e-28 Identities = 160/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACA-GCTGACGGTCGTC 34236 || |||| ||| | ||| ||| || || |||||||| || |||| | || ||| | || Sbjct 195989 AGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAATCAGACAAGGTG-CGGCCATC 196047 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 ||||| |||||||| || || ||||| |||||||||||| || | || |||||||| Sbjct 196048 TTCCAATTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 196107 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||||||||| | || | || ||||| | ||| ||||| || | ||||||||| Sbjct 196108 CTGGATCTTTTGCTTGACATTATCAATGGAATCCGACGACTCGACCTCGAGCGTGATGGT 196167 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || | ||| || |||||||||||||| Sbjct 196168 CTTGCCAGTCAAAGTCTTAACAAAGATCTGCAT 196200 >seq45 Length=303593 Score = 161 bits (178), Expect = 6e-35 Identities = 165/213 (77%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACA-GCTGACGGTCGTC 34236 || |||| ||| || || ||| ||||| |||||||| || |||| | || ||| |||| Sbjct 87323 AGGACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAATCAGACAAGGTG-CGGCCGTC 87265 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 ||||| |||||||| || || ||||| |||||||||||| ||| | || |||||||| Sbjct 87264 TTCCAATTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCTTCCTTGTC 87205 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||||||||| | || | | || || |||| ||||||||| |||| |||||||| Sbjct 87204 TTGGATCTTTTGCTTGACATTGTCGATGGAGTCGGACGATTCGACCTCCAAAGTGATGGT 87145 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| | || || |||||||||||||| Sbjct 87144 CTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 87112 Score = 158 bits (174), Expect = 8e-34 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | || |||| ||| | || ||| || || |||||||||||||| Sbjct 87566 CCGCCACGGAGACGGAGGACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCGGAA 87507 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| |||| ||||| || ||||| || || ||||| ||||| |||||| || Sbjct 87506 AGCGTGCGGCCGTCTTCCAATTGTTTGCCGGCAAAGATGAGGCGCTGTTGGTCGGGAGGG 87447 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||||||||| | || | | || ||||||| ||||||||| Sbjct 87446 ATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTGTCGATGGAATCGGACGATTCGACC 87387 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| |||||||| | || || |||||||||||||| Sbjct 87386 TCCAAAGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 87340 Score = 149 bits (164), Expect = 4e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | || |||| ||| | || ||| || || ||||||||||| || Sbjct 86882 CCACCGCGCAGACGGAGGACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCAGAG 86823 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || || | ||||||||| ||||||||||| ||||||||||| || Sbjct 86822 AGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGAGGG 86763 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||||||||| | || | | || ||||||| ||| || || Sbjct 86762 ATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTGTCGATGGAATCGGACGACTCCACC 86703 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| ||||| || || || || |||||||| Sbjct 86702 TCCAAGGTGATGGTCTTGCCAGTGAGCGTCTTGACGAAAATCTGCAT 86656 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | ||| |||| ||| | ||| || || || ||||||||||| ||| Sbjct 86654 CCACCACGGAGACGCAGAACCAAGTGCAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAC 86595 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| |||| |||| ||||||||| || ||||| | |||||||| ||| ||| Sbjct 86594 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAAATCAAACGCTGCTGATCGGGGGGA 86535 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| || || ||||| | | | | || ||||||| ||| ||||| Sbjct 86534 ATGCCCTCCTTGTCTTGGATTTTCTGCTTGACGTTGTCGATAGAATCGGACGACTCGACC 86475 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| |||||||| || || || || ||||| Sbjct 86474 TCCAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAAATTTGCAT 86428 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | || |||| ||| | || ||| || || ||||||||||| || Sbjct 87110 CCACCGCGCAGGCGGAGAACCAAGTGGAGCGTGGATTCCTTTTGAATGTTGTAGTCAGAG 87051 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || ||||| |||||||| |||||||| | ||||||||||| || Sbjct 87050 AGCGTGCGGCCATCCTCCAATTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGG 86991 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| || || ||||| | || | | || || |||| ||| || || Sbjct 86990 ATGCCTTCCTTGTCTTGAATTTTCTGCTTGACATTGTCAATGGAGTCGGACGACTCCACC 86931 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| ||||| || || || ||||| ||||| Sbjct 86930 TCGAGTGTGATGGTCTTGCCAGTGAGCGTCTTGACGAAGATTTGCAT 86884 >seq56 Length=224513 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||||| | |||||||||||| || || || || || |||||||| || ||| Sbjct 32427 CCGCCGCGCAATCGCAGCACCAGGTGCAACGTCGACTCCTTTTGGATGTTGTAATCCGAC 32486 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || ||||| |||||||| || || ||||| || ||||| || || Sbjct 32487 AGCGTGCGGCCATCCTCCAATTGCTTGCCGGCAAAGATGAGTCGTTGCTGATCAGGCGGA 32546 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||||||||| | || | || ||||| | |||||| || Sbjct 32547 ATACCCTCCTTGTCTTGGATCTTTTGCTTCACATTATCAATTGAATCCGACGATTCAACC 32606 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| ||||| || || || ||||| ||||| Sbjct 32607 TCAAGTGTGATGGTCTTGCCAGTGAGCGTCTTGACGAAGATTTGCAT 32653 >seq1 Length=1252801 Score = 100 bits (110), Expect = 2e-16 Identities = 103/132 (78%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGAC-AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 || ||||| ||||||||||||||| || || ||| |||| |||||||||||||| ||||| Sbjct 333542 TCCTTCTGGATGTTGTAGTCGGACAAGGTG-CGGCCGTCTTCCAACTGCTTGCCAGCGAA 333600 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || | |||||||||||| ||| | | |||||||| ||||||||||| | || Sbjct 333601 GATCAAGCGCTGCTGGTCGGGGGGAATACCTTCCTTGTCTTGGATCTTTTGCTTGACATT 333660 Query 34318 GGCTATCGAATC 34329 | | ||||| || Sbjct 333661 GTCAATCGAGTC 333672 >seq94 Length=66050 Score = 89.7 bits (98), Expect = 3e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| | ||| ||| || || ||||||||||| |||| | ||| | || Sbjct 22814 AGGACCAAGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCAGACAACGTGCGGCCATCT 22873 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 ||||| |||||||| ||||| || | ||||||||||| ||| | || ||||||||| Sbjct 22874 TCCAATTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCT 22933 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATC 34329 ||||||||||| | || | | || || || Sbjct 22934 TGGATCTTTTGCTTGACATTGTCGATAGAGTC 22965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071413321440