Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq45 107 2e-18 seq56 96.9 3e-15 seq33 96.9 3e-15 seq65 91.5 1e-13 seq61 89.7 5e-13 >seq45 Length=303593 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| ||| ||||| | || ||||| ||||| ||||| || || | Sbjct 86654 CCACCACGGAGACGCAGAACCAAGTGCAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAC 86595 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||| || ||||| || || ||| | |||| ||| ||||||||||| || Sbjct 86594 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAAATCAAACGCTGCTGATCGGGGGGA 86535 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| |||||| || || | | || | | |||| | ||| ||| Sbjct 86534 ATGCCCTCCTTGTCTTGGATTTTCTGCTTGACGTTGTCGATAGAATCGGACGACTCGACC 86475 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAG 139766 || | || | |||||||| || | || || ||||| |||||||||| Sbjct 86474 TCCAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAAATTTGCATAG 86426 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | ||| | || ||||| | ||| || || ||||| ||||| || ||| Sbjct 87567 GCCGCCACGGAGACGGAGGACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCGGA 87508 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| |||||| | ||||| || ||| |||| || || || || |||||||| Sbjct 87507 AAGCGTGCGGCCGTCTTCCAATTGTTTGCCGGCAAAGATGAGGCGCTGTTGGTCGGGAGG 87448 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| ||||| || | | || | | |||| | || || Sbjct 87447 GATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTGTCGATGGAATCGGACGATTCGAC 87388 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | |||||||||||||| || || || || || ||||| Sbjct 87387 CTCCAAAGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 87340 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || ||||| | || || || || || ||||| ||||| Sbjct 87339 GCCACCACGGAGACGGAGGACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAATCAGA 87280 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| |||||| | || || || ||| |||| || || ||||| ||||| || Sbjct 87279 CAAGGTGCGGCCGTCTTCCAATTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGG 87220 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| ||||| || | | || | | ||||| | || || Sbjct 87219 AATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTGTCGATGGAGTCGGACGATTCGAC 87160 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | |||||||||||||| || || || || || ||||| Sbjct 87159 CTCCAAAGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 87112 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | || | ||| ||||| | ||| || || ||||||||||| || || Sbjct 87111 GCCACCGCGCAGGCGGAGAACCAAGTGGAGCGTGGATTCCTTTTGAATGTTGTAGTCAGA 87052 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || || | || || || || | |||| ||| ||||| || ||||| Sbjct 87051 GAGCGTGCGGCCATCCTCCAATTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCAGGAGG 86992 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||||| || || | | || | | ||||| | |||||| Sbjct 86991 GATGCCTTCCTTGTCTTGAATTTTCTGCTTGACATTGTCAATGGAGTCGGACGACTCCAC 86932 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | |||||||| || | ||| || ||||| |||||||| Sbjct 86931 CTCGAGTGTGATGGTCTTGCCAGTGAGCGTCTTGACGAAGATTTGCAT 86884 >seq56 Length=224513 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || || |||| || | ||| | ||| ||||| ||||| ||||| ||||| Sbjct 32426 GCCGCCGCGCAATCGCAGCACCAGGTGCAACGTCGACTCCTTTTGGATGTTGTAATCCGA 32485 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| || || | || || || ||| |||| || ||||||||||| || || Sbjct 32486 CAGCGTGCGGCCATCCTCCAATTGCTTGCCGGCAAAGATGAGTCGTTGCTGATCAGGCGG 32545 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| ||||| || | | || | || || | | || || Sbjct 32546 AATACCCTCCTTGTCTTGGATCTTTTGCTTCACATTATCAATTGAATCCGACGATTCAAC 32605 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || | |||||||| || | ||| || ||||| |||||||| Sbjct 32606 CTCAAGTGTGATGGTCTTGCCAGTGAGCGTCTTGACGAAGATTTGCAT 32653 >seq33 Length=455653 Score = 96.9 bits (106), Expect = 3e-15 Identities = 319/489 (65%), Gaps = 14/489 (3%) Strand=Plus/Minus Query 52567 AAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCCACTTTTGCCGAACGTCTG 52626 |||| || |||||||| |||||| | | |||| ||| |||||||| || || Sbjct 391282 AAGGCCGACTGGGCATTCCGCTGGATCTCGAGCAACAA---CACGTTTGCCGAGCGCCTT 391226 Query 52627 GTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTTGCGGCAATATTTTAC 52686 || || ||||| || || || | || || || ||| |||||| | || |||| Sbjct 391225 GTTGCTTTTGCGGCGGTTGAGGGCATTTTCTTCTCTGGTGCGTTTGCGTCCATCTTTTGG 391166 Query 52687 ATCAAAACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATATCGCGCGAC 52746 |||| | ||| | ||||| ||| | ||||| ||||||| |||| | || ||| Sbjct 391165 CTCAAGAAGCGCGGCTTGATGCCTGGCTTGACGTTCTCCAACGAGCTGATTTGCCGTGAC 391106 Query 52747 GAAGGAATGCACACAGATTTTGCGTGTTTGTATTATA---ATACGCGCGTTAAAGAAAAA 52803 || || ||||||| || |||||||| || | | || |||| || | Sbjct 391105 GAGGGTTTGCACACGGACTTTGCGTGCCTGCTCTTTGGCCATCTGCGC----AACACGCC 391050 Query 52804 TTGTCATATGAAAAAATTCTAGACATGTTTAAAGAGGCCGTCGACATTGAAAAAGAGTTT 52863 || || |||| | | || || | | ||||||||| | ||||| |||| || Sbjct 391049 TTC-CA-ATGACCGTGTGCGCGATATCATCACCGAGGCCGTCAAGATTGAGCAAGAATTC 390992 Query 52864 TTTACGGACGCTTTACCCGTATCATTGTTGGGCATGAACGCGACCATGATGTGCGAGTAC 52923 | || ||||| | || || | | | ||||||||| | | | |||||| | ||| Sbjct 390991 CTGACCGACGCGCTGCCTGTCGCGCTCATTGGCATGAACTCCAAGCTCATGTGCCAATAC 390932 Query 52924 ATCGAGTTTGTTGCGGACAGACTG-TTGATGCAGCTCGGTCAGCCGAAATACTATAATGC 52982 || || |||||||||||| | ||| | | ||| || || ||| || |||| || || Sbjct 390931 ATTGAATTTGTTGCGGACCGCCTGCTCGTTGC-TCTTGGCCAGGACAAGCACTACAAGGC 390873 Query 52983 GCGTAACCCCTTTTCGTTTATGAACAACATATCGCTCGAGGGCAAAACAAACTTTTTCGA 53042 || |||||| |||||| || ||| |||||| ||||||| || || || || || Sbjct 390872 AACCAATCCCTTTGACTTTATGGACCTCATCTCGCTCCAGGGCAAGACCAATTTCTTTGA 390813 Query 53043 GAGACGTGT 53051 || ||||| Sbjct 390812 GAAGCGTGT 390804 >seq65 Length=159763 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 152763 TAGTACATGCCCGTCTTGAGGCCACGTTGCCAGCCGTACATGTGCACCGACGCCATCTTA 152822 ||||||||||||||||||||||| || |||| | || | ||||| |||| | ||| Sbjct 94418 TAGTACATGCCCGTCTTGAGGCCCTTTTTCCAGGCATAAAAGTGCATGGACGTGAGCTT- 94476 Query 152823 GCCAA-AGTAGGGTCGGCCATGTACACGTTAAACGATTGACTTTGATCAATAAATGCGCC 152881 ||||| || |||||| || ||| ||| | |||||||| || ||||| || ||||| Sbjct 94477 GCCAACGGTGGGGTCGCTGCTGAACAGGTTCATGGATTGACTCTGGTCAATGAACGCGCC 94536 Query 152882 TCTATCTGCTGCCATGTCGATCAT 152905 | || || ||||||||||| || Sbjct 94537 GCGGTCCGCAGCCATGTCGATGAT 94560 >seq61 Length=186913 Score = 89.7 bits (98), Expect = 5e-13 Identities = 86/108 (80%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 152745 GCCGGAAGCGTACGAAAATAGTACATGCCCGTCTTGAGGCCACGTTGCCAGCCGTACATG 152804 || ||| |||| || |||||||||||||| ||||||||||| || ||||||||| | Sbjct 183158 GCGGGACGCGTGCGCAAATAGTACATGCCGGTCTTGAGGCCCTTTTTCCAGCCGTAGAAA 183217 Query 152805 TGCACCGACGCCATCTTAGCCAAAGTAGGG-TCGGCCATGTACACGTT 152851 |||| |||| || ||| |||||||| ||| |||| ||| ||||||| Sbjct 183218 TGCATGGACGTCAGCTT-GCCAAAGTTGGGCACGGCAATGAACACGTT 183264 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 153642 GCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTACTATTTCCGCACACAAA 153701 ||||||||||| |||||| | || |||||| | |||| || || |||| |||||| Sbjct 184220 GCCAAGTTGCACACGGCAATCTCATCGGGGCTCGAGTATTCGACAATCTCCGTGCACAAA 184279 Query 153702 TTGCTGCATTTTATCAGGCCGCAATTACTTTGATTGCTTTTGCGGTTACAAGCGTCCTTG 153761 ||||||||||| || |||| || || ||| ||||||||| || ||||||||| Sbjct 184280 TTGCTGCATTTGATGGTGCCGAGGTTCTGCTGGTTGGATTTGCGGTTGCACGCGTCCTTG 184339 Query 153762 TATAGCATGTATGGTGTGCCGGTTTCGG 153789 || | ||| | || |||| || |||| Sbjct 184340 TACAAGATGAACGGATTGCCCGTCTCGG 184367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063076080800