Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq61 167 3e-36 seq33 161 1e-34 seq65 104 3e-17 >seq61 Length=186913 Score = 167 bits (184), Expect = 3e-36 Identities = 353/519 (68%), Gaps = 12/519 (2%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || || |||| |||| ||| || |||| ||||| | ||| ||| | | | || Sbjct 184767 ACCAATGGCACGGCCAATGGTCTGTTGCCTATGCTGCGCGTGTTCAACAACACGGCGCGC 184708 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 |||||| || || || || || || || || || | ||| | ||| | || |||||| Sbjct 184707 TACGTTGACCAAGGAGGGAACAAGCGCCCGGGTGCGTTTGCCATGTACCTCGAGCCTTGG 184648 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 ||||| ||| |||| |||| | || ||||||| ||| ||| || ||| || Sbjct 184647 CACGCCGACATTTTCACCTTTTTGGAATTGCGCAAGAACGTGGGCAAGGACGAGATCCGC 184588 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGAC 97046 || | || |||||||| || ||||||||||| ||||||||||||||||| ||| | | | Sbjct 184587 GCGCGCGATTTGTTTTACGCGCTCTGGGTGCCTGATTTGTTCATGAAGCGTGTCGAGGCC 184528 Query 97047 GGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGC 97106 |||| ||||| || | |||||| || | | ||| | || ||| |||||| Sbjct 184527 AATGGCGACTGGTCGCTCTTTTGCCCCAACGAGGCGCCCAATTTGCACGAGGTGTGGGGC 184468 Query 97107 GAAGAGTTTGAGGCCAAGT---ACACGGCCTACGAGCAAGAGGGCCGATACGTG--AGAC 97161 || || || |||||| || | | | ||||| | |||||||| | || | |||| Sbjct 184467 GATGAATTCGAGGCCTTGTTTGAAAAG---TACGAAAAGGAGGGCCG-TGCGCGCCAGAC 184412 Query 97162 GAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTC 97221 || || | || | | | ||||| | || || | ||| ||| ||||| || | || Sbjct 184411 GA-TCAAGGCGCAAAAGTTGTGGTACGCGATTCTCGAGGCCCAGACCGAGACGGGCAATC 184353 Query 97222 CGTACATTCTCTACAAGGATACCGTG-AATCGCAACAGCAACCAACGCCACTTGGGCACC 97280 ||| ||| | |||||||| |||| || ||||| |||||| | || | |||||| Sbjct 184352 CGTTCATCTTGTACAAGGA-CGCGTGCAACCGCAAATCCAACCAGCAGAACCTCGGCACC 184294 Query 97281 ATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319 ||||| || |||| |||||||||| ||||| || ||| Sbjct 184293 ATCAAATGCAGCAATTTGTGCACGGAGATTGTCGAATAC 184255 >seq33 Length=455653 Score = 161 bits (178), Expect = 1e-34 Identities = 305/445 (69%), Gaps = 23/445 (5%) Strand=Plus/Minus Query 125418 GCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCG 125477 ||||| | || || || || || || || |||||||| ||||| || ||| |||||| Sbjct 391237 GCCGAGCGCCTTGTTGCTTTTGCGGCGGTTGAGGGCATTTTCTTCTCTGGTGCGTTTGCG 391178 Query 125478 GCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTT 125537 ||||||||||||||||||||||||| | ||||| || ||||| | |||||| | Sbjct 391177 TCCATCTTTTGGCTCAAGAAGCGCGGCTTGATGCCTGGCTTGACGTTCTCCAACGAGCTG 391118 Query 125538 ATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTG 125597 || | || |||||||| | ||| |||||||| || || ||| || | |||| Sbjct 391117 ATTTGCCGTGACGAGGGTTTGCACACGGACTTTGCGTGCCTGCTCTTTGGCCA---TCTG 391061 Query 125598 CGT--CCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGA 125655 || | || | |||| |||| || | | || | ||||| ||||| | Sbjct 391060 CGCAACACGCCT-----TCCA---ATGACCGTGTGCGCGATATCATCACCGAGGCCGTCA 391009 Query 125656 GGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCA 125715 ||| || ||||| || || ||||| | || || ||| | ||||||||||||| || Sbjct 391008 AGATTGAGCAAGAATTCCTGACCGACGCGCTGCCTGTCGCGCTCATTGGCATGAACTCCA 390949 Query 125716 AGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG--ATTGG 125773 |||| |||||| | ||||| || ||||| || || || || || |||| |||| Sbjct 390948 AGCTCATGTGCCAATACATTGAATTTGTTGCGGACCGCCTGCT-----CGTTGCTCTTGG 390894 Query 125774 CC---GCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGA 125830 || |||| ||||| || | ||||||||||| || ||| | ||| || || | Sbjct 390893 CCAGGACAAGCACTACAAGGCAACCAATCCCTTTGACTTTATGGACCTCATCTCGCTCCA 390834 Query 125831 GGGTAAGACCAACTTTTTCGAGAAG 125855 ||| |||||||| || || |||||| Sbjct 390833 GGGCAAGACCAATTTCTTTGAGAAG 390809 Score = 152 bits (168), Expect = 8e-32 Identities = 188/257 (73%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| || | ||||||||||| |||| ||||||||||||| ||| ||| | |||||| Sbjct 391704 ATCTGGCAATTCTACAAAAAGGCAGAGGCGTCCTTTTGGACGGCCGAGGAGATTGATCTG 391645 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||||||||| || ||||||| |||||| ||||| | || || ||| Sbjct 391644 TCCAAGGACCTTGGTGACTGGGAGAACAAGATGACTGCTGACGAGCGCTACTTCATTTCG 391585 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 |||||| |||| |||||||| |||| ||||| || |||||||| || || || | Sbjct 391584 CACATTCTGGCGTTCTTTGCAAGCTCGGATGGCATTGTCAACGAGAACTTGGTGCAAAAC 391525 Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATT 125258 ||| | ||| | | ||| | |||| ||||||||| || ||||||||||||||| Sbjct 391524 TTCATGGACGAGGTCAAGATTGCCGAGGCAAAGTGCTTTTATGGCTTCCAAATCATGATT 391465 Query 125259 GAGAACGTGCACTCGGA 125275 ||||| | ||||| || Sbjct 391464 GAGAATATCCACTCCGA 391448 Score = 96.9 bits (106), Expect = 5e-15 Identities = 185/270 (69%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 70304 TTGTCATGCTTAATGTATCAGAGGA-GTGCCGACATGGGCCTCGGTGTACCCTTTAACAT 70362 ||||| ||| | | || ||| || |||| ||||||||||| || || || || || || Sbjct 101917 TTGTCGTGCGTGCTTTACCAGCGGTCGTGC-GACATGGGCCTGGGCGTGCCATTCAATAT 101859 Query 70363 TGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGA 70422 ||| || | || |||||| ||||||||| || | || | |||| || | ||| Sbjct 101858 TGCGTCGTACGCGTTGCTGACGCGCATGATTGCGCATGTCACGGACCTGGAACCCGGCGA 101799 Query 70423 GTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGT 70482 ||| | |||||||| |||||| | ||||| ||| | | || |||| || | ||||| Sbjct 101798 ATTCATCCACACCATGGGCGACACGCACGTCTATGTCGACCATCTCGACGCACTCAAGGT 101739 Query 70483 GCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGTTGAAAA 70542 || ||| | || |||||| | | || |||| || ||||| || ||| | || || Sbjct 101738 CCAGCTCCAGCGCGAGCCGCGCGCCTTCCCCACACTCACCTTTGCACGCAAAATCGACAA 101679 Query 70543 TATTGACAGTTTTAAGTACGAAGATTTTAT 70572 || ||| |||| || || || ||||| Sbjct 101678 CATCGACGACTTTACCTATGACGACTTTAT 101649 >seq65 Length=159763 Score = 104 bits (114), Expect = 3e-17 Identities = 133/181 (73%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 98040 TACAAGACTGTCTGGGAGATTCCG-ACCAAGACGCTGATCGATATGGCTGCCGACAGAGG 98098 |||||||| || |||||||| || | | | | | ||||| |||||||| ||| | || Sbjct 94593 TACAAGACGGTGTGGGAGATCTCGCAGCGCGT-GATCATCGACATGGCTGCGGACCGCGG 94535 Query 98099 TGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCG 98158 | | |||||||||||||||||| | || |||| | ||| |||||| | Sbjct 94534 CGCGTTCATTGACCAGAGTCAATCCATGAACCTGTTCAGCAGCGACCCCACCGTTGGCAA 94475 Query 98159 TATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCT 98218 | || || || |||||||| || ||||| |||||||||||||||||||||||||| || Sbjct 94474 GCTCACGTCCATGCACTTTTATGCCTGGAAAAAGGGCCTCAAGACGGGCATGTACTACCT 94415 Query 98219 G 98219 | Sbjct 94414 G 94414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741057819777240