Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq45 102 7e-17 seq30 95.1 1e-14 >seq45 Length=303593 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || || || ||||| ||||| |||||||| ||| | || |||||| Sbjct 87548 ACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGCGTGCGGCCGTCTTCC 87489 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 ||||||||||| ||| | || || | |||||| ||| || | |||||| ||||| Sbjct 87488 AATTGTTTGCCGGCAAAGATGAGGCGCTGTTGGTCGGGAGGGATGCCTTCCTTGTCTTGG 87429 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 || ||||| || || | | | | |||||| | ||| |||| || ||||| ||| Sbjct 87428 ATCTTTTGCTTGACATTGTCGATGGAATCGGACGATTCGACCTCCAAAGTGATGGTCTTG 87369 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||||||| || |||||||| || ||||| Sbjct 87368 CCGGTCAAGGTCTTGACAAAGATCTGCAT 87340 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || | || ||||| || || ||||||||||| || || |||||| Sbjct 87320 ACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAATCAGACAAGGTGCGGCCGTCTTCC 87261 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 ||||| ||||| ||| | || || | ||| || ||| ||| | |||||| ||||| Sbjct 87260 AATTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCTTGG 87201 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 || ||||| || || | | | | || ||| | ||| |||| || ||||| ||| Sbjct 87200 ATCTTTTGCTTGACATTGTCGATGGAGTCGGACGATTCGACCTCCAAAGTGATGGTCTTG 87141 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||||||| || |||||||| || ||||| Sbjct 87140 CCGGTCAAGGTCTTGACAAAGATCTGCAT 87112 >seq30 Length=460931 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||||||||| || || || || ||||| |||||||| || | || ||||| Sbjct 195763 CACCAAATGCAGCGTGGACTCCTTTTGAATGTTGTAGTCAGAGAGCGTGCGGCCGTCTTC 195822 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 |||||| ||||| || |||| || | ||| || || ||| | |||||| ||||| Sbjct 195823 CAATTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTG 195882 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 ||| ||||| || || | | | | |||||| | ||| ||||| || ||||| || Sbjct 195883 AATCTTTTGCTTGACATTGTCGATCGAATCGGACGATTCGACTTCCAAAGTGATGGTCTT 195942 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| || | ||| |||||||| |||||||| Sbjct 195943 GCCAGTGAGCGTCTTGACAAAGATTTGCAT 195972 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || || |||||||| ||||| ||||||||||| || || ||||||| Sbjct 195992 ACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAATCAGACAAGGTGCGGCCATCTTCC 196051 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 ||||| ||||| ||| | || || | ||| || ||| || | |||||| ||||| Sbjct 196052 AATTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGG 196111 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 || ||||| || || | ||| ||||| | || || | || ||||| ||| Sbjct 196112 ATCTTTTGCTTGACATTATCAATGGAATCCGACGACTCGACCTCGAGCGTGATGGTCTTG 196171 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || ||||| || || ||||| || ||||| Sbjct 196172 CCAGTCAAAGTCTTAACAAAGATCTGCAT 196200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419586438055869