Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq61 277 5e-69 seq33 114 3e-20 seq65 91.5 4e-13 >seq61 Length=186913 Score = 277 bits (306), Expect = 5e-69 Identities = 578/861 (67%), Gaps = 0/861 (0%) Strand=Plus/Minus Query 363430 ATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATC 363489 |||||||| | | | || || ||||||||| || | |||||||| ||| |||||||| Sbjct 185085 ATCAATGGCAAGGTGGCGGAGCGTCCGCAGCATTTGATCATGCGTGTGGCTGTTGGTATC 185026 Query 363490 CATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTC 363549 ||| || || |||||||||| | || || || |||| | | || | ||| Sbjct 185025 CATGGCGAAGACATTGATGCCGCTTTGGAGACGTACCAGCTCATGTCGGAGCGATTCTTC 184966 Query 363550 ACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGC 363609 |||||||| | || || ||| |||||| || || | | || || ||||| || ||| Sbjct 184965 ACGCACGCGAGCCCGACGTTGTTCAATGCCGGCACGCCTCGCCCGCAAATGTCGTCGTGC 184906 Query 363610 TTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGT 363669 || | || | |||||||| || || || ||||| |||| || || || ||| ||| Sbjct 184905 TTCTTGCTGACTATGAAGGAGGACTCGATTGAGGGCATCTACGAGACGCTCAAGTGCTGT 184846 Query 363670 GCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAG 363729 || | || ||||||| || ||||| ||||| | |||||||| | || || | Sbjct 184845 GCGCAAATCTCCAAGACGGCCGGCGGCATTGGCTTGAACATCCACAACATCCGCGCCACG 184786 Query 363730 AACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTG 363789 | |||||| |||||| || | ||||| ||| | || ||||| || ||| Sbjct 184785 GGCTCGTACATTGCCGGCACCAATGGCACGGCCAATGGTCTGTTGCCTATGCTGCGCGTG 184726 Query 363790 TTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCT 363849 || |||| || ||| | ||||| ||||| || || |||||| || |||||||| Sbjct 184725 TTCAACAACACGGCGCGCTACGTTGACCAAGGAGGGAACAAGCGCCCGGGTGCGTTTGCC 184666 Query 363850 ATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACG 363909 ||||| ||||||||| || ||||| ||||| ||| | || | || || ||| | Sbjct 184665 ATGTACCTCGAGCCTTGGCACGCCGACATTTTCACCTTTTTGGAATTGCGCAAGAACGTG 184606 Query 363910 GGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTT 363969 || || || || | || || || ||| |||| || || || ||||| |||| || Sbjct 184605 GGCAAGGACGAGATCCGCGCGCGCGATTTGTTTTACGCGCTCTGGGTGCCTGATTTGTTC 184546 Query 363970 ATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGT 364029 |||||||| || ||||| | | ||||| ||||||||||| |||| || | Sbjct 184545 ATGAAGCGTGTCGAGGCCAATGGCGACTGGTCGCTCTTTTGCCCCAACGAGGCGCCCAAT 184486 Query 364030 CTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGA 364089 | ||| || ||||| || || | | || | | |||||||| ||| |||||| Sbjct 184485 TTGCACGAGGTGTGGGGCGATGAATTCGAGGCCTTGTTTGAAAAGTACGAAAAGGAGGGC 184426 Query 364090 AAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATT 364149 || || |||| || || || ||| | |||| || || | || | |||| Sbjct 184425 CGTGCGCGCCAGACGATCAAGGCGCAAAAGTTGTGGTACGCGATTCTCGAGGCCCAGACC 184366 Query 364150 GAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAG 364209 ||||| || | || | || |||||||| || ||||||||||||| |||||||||||| Sbjct 184365 GAGACGGGCAATCCGTTCATCTTGTACAAGGACGCGTGCAACCGCAAATCCAACCAGCAG 184306 Query 364210 CACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCC 364269 |||| || || || | ||||| | || || |||||| | |||||| | ||| Sbjct 184305 AACCTCGGCACCATCAAATGCAGCAATTTGTGCACGGAGATTGTCGAATACTCGAGCCCC 184246 Query 364270 GACGAGACTGCCGTATGTAAC 364290 || |||| |||||| || ||| Sbjct 184245 GATGAGATTGCCGTGTGCAAC 184225 >seq33 Length=455653 Score = 114 bits (126), Expect = 3e-20 Identities = 299/452 (66%), Gaps = 3/452 (1%) Strand=Plus/Minus Query 22483 TTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTT 22542 || || || || ||| |||| ||||| | |||||| ||||||||||| ||||| || ||| Sbjct 391240 TTTGCCGAGCGCCTTGTTGCTTTTGCGGCGGTTGAGGGCATTTTCTTCTCTGGTGCGTTT 391181 Query 22543 TGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAG 22602 | ||||||||||| || || || | | ||||| || | ||||| || || ||| Sbjct 391180 GCGTCCATCTTTTGGCTCAAGAAGCGCGGCTTGATGCCTGGCTTGACGTTCTCCAACGAG 391121 Query 22603 TTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCAT 22662 | ||| |||| || |||||| | || || || |||||||| |||| | | | ||| Sbjct 391120 CTGATTTGCCGTGACGAGGGTTTGCACACGGACTTTGCGTGCCTGCTCTTTGGCCATCTG 391061 Query 22663 ATCATTCATAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTT 22722 || || |||||| |||| ||| | ||||| || || | || || | || Sbjct 391060 CGCA-ACA-CGCCTTCCA-ATGACCGTGTGCGCGATATCATCACCGAGGCCGTCAAGATT 391004 Query 22723 GAACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCA 22782 || | ||| | ||| ||| | || || |||||||| || || || | Sbjct 391003 GAGCAAGAATTCCTGACCGACGCGCTGCCTGTCGCGCTCATTGGCATGAACTCCAAGCTC 390944 Query 22783 ATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAG 22842 ||| | ||| ||| |||||||||| || || || | || | || || | | ||| Sbjct 390943 ATGTGCCAATACATTGAATTTGTTGCGGACCGCCTGCTCGTTGCTCTTGGCCAGGACAAG 390884 Query 22843 CATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACC 22902 || || || | ||||| ||||| | ||||| || || || || | || |||||| Sbjct 390883 CACTACAAGGCAACCAATCCCTTTGACTTTATGGACCTCATCTCGCTCCAGGGCAAGACC 390824 Query 22903 AATTTCTTCGAAAAAAGAGTTGGTGAATACCA 22934 |||||||| || || | || ||| ||||| Sbjct 390823 AATTTCTTTGAGAAGCGTGTCTCTGACTACCA 390792 >seq65 Length=159763 Score = 91.5 bits (100), Expect = 4e-13 Identities = 177/257 (69%), Gaps = 6/257 (2%) Strand=Plus/Minus Query 363760 TCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGAC-CA 363818 || ||||| | || |||||| | || |||| | |||| ||| | | || ||| || Sbjct 96271 TCCAATGGCATTGTGCCCATGTTGCGCGTGTACAATGATACGGCGCGCTTTGT-GACGCA 96213 Query 363819 GGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATAT 363878 ||||| || |||||||| || || || |||||||||||||| || | || | Sbjct 96212 AGGTGGTGGCAAGCGCAACGGCAGCTTCGCCATGTATCTCGAGCCCTGGCACACGGACGT 96153 Query 363879 TTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCT 363938 ||||| ||| | || || || || ||| |||| || |||||| |||| || || || || Sbjct 96152 ATTTGACTTTTTGGATCTGCGCAAGAACTCGGGCAAGGAGGAAATGCGCGCGCGCGACCT 96093 Query 363939 GTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAA--T 363996 |||| || || ||| | | || || |||||||| |||||||| | | ||| Sbjct 96092 GTTCCTTGGTCTGTGGATCTGCGATTTGTTCATGAAGCGTGTGGAGGC--GAACGAAACG 96035 Query 363997 TGGTCACTCTTTTGCCC 364013 ||||| || || ||||| Sbjct 96034 TGGTCTCTGTTCTGCCC 96018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303351111816518