Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq45 113 4e-20 seq30 113 4e-20 >seq45 Length=303593 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| |||||||||||||| ||||||||||| | | Sbjct 86654 CCACCACGGAGACGCAGAACCAAGTGCAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAC 86595 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||||||| || ||||| ||| |||| | ||||| || || || Sbjct 86594 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAAATCAAACGCTGCTGATCGGGGGGA 86535 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| ||||| |||| |||||| || | | | | || ||| | ||| Sbjct 86534 ATGCCCTCCTTGTCTTGGATTTTCTGCTTGACGTTGTCGATAGAATCGGACGACTCGACC 86475 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| || || || || || ||||| ||||| ||||| Sbjct 86474 TCCAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAAATTTGCAT 86428 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || |||||||| |||||||| ||||||||||||| | || | |||| Sbjct 87551 AGGACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGCGTGCGGCCGTCT 87492 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||||||||||||| ||| | || || ||||||||||| ||| | ||| || ||||| Sbjct 87491 TCCAATTGTTTGCCGGCAAAGATGAGGCGCTGTTGGTCGGGAGGGATGCCTTCCTTGTCT 87432 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | ||||| || | | | | | ||| | || |||| |||||||| Sbjct 87431 TGGATCTTTTGCTTGACATTGTCGATGGAATCGGACGATTCGACCTCCAAAGTGATGGTC 87372 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||||| || |||||||| |||||||| Sbjct 87371 TTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 87340 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || |||||||| |||||||| ||||||||||| | | || | | ||| Sbjct 87095 AGAACCAAGTGGAGCGTGGATTCCTTTTGAATGTTGTAGTCAGAGAGCGTGCGGCCATCC 87036 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||||||| ||||| || |||| | ||||| ||||| ||| | ||| || ||||| Sbjct 87035 TCCAATTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCT 86976 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||||| |||||| || | | | | | |||| | |||| || | |||||||| Sbjct 86975 TGAATTTTCTGCTTGACATTGTCAATGGAGTCGGACGACTCCACCTCGAGTGTGATGGTC 86916 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || ||||| ||||| || || ||||| Sbjct 86915 TTGCCAGTGAGCGTCTTGACGAAGATTTGCAT 86884 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || |||||||| |||||||| ||||||||||| | | || | | ||| Sbjct 86867 AGGACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGCGTGCGGCCATCC 86808 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || ||||| || |||| || ||||| ||||| ||| | ||| || ||||| Sbjct 86807 TCGAGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCT 86748 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | ||||| || | | | | | ||| | |||| |||| ||||||||| Sbjct 86747 TGGATCTTTTGCTTGACATTGTCGATGGAATCGGACGACTCCACCTCCAAGGTGATGGTC 86688 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || ||||| ||||| ||||||||||| Sbjct 86687 TTGCCAGTGAGCGTCTTGACGAAAATCTGCAT 86656 >seq30 Length=460931 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||||||||||||||||||| ||||||||||| | | || | |||| Sbjct 195761 AGCACCAAATGCAGCGTGGACTCCTTTTGAATGTTGTAGTCAGAGAGCGTGCGGCCGTCT 195820 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||||||| ||||| || |||| || ||||| ||||| || | ||| || ||||| Sbjct 195821 TCCAATTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCT 195880 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | ||||| || | | | | | ||| | || ||||| |||||||| Sbjct 195881 TGAATCTTTTGCTTGACATTGTCGATCGAATCGGACGATTCGACTTCCAAAGTGATGGTC 195940 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || ||||| |||||||| || ||||| Sbjct 195941 TTGCCAGTGAGCGTCTTGACAAAGATTTGCAT 195972 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| |||| ||||||||||||||| ||||||||||| | || || | | ||| Sbjct 196217 AGCACCAAGTGCAACGTGGACTCCTTTTGGATGTTGTAGTCAGACAGCGTGCGGCCATCC 196276 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || ||||| ||| | ||||| ||||| ||||| || | ||||| ||||| Sbjct 196277 TCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCT 196336 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | ||||| || | | | | || ||| | ||| |||| |||||||| Sbjct 196337 TGAATCTTTTGCTTGACATTGTCAATAGAGTCCGACGACTCGACCTCCAGAGTGATGGTC 196396 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || || || || || ||||| ||||| ||||| ||| Sbjct 196397 TTGCCAGTGAGAGTCTTGACGAAAATTTGCATGTTG 196432 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| || |||||||| |||||||| ||||||||||||| | Sbjct 195518 CCACCGCGGAGACGCAGGACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCGGAC 195577 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||| | || ||||| ||| | ||||| ||||| ||||| ||| Sbjct 195578 AGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCGGGAGGG 195637 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || || ||||| || | ||||| || | | | | | || | ||| Sbjct 195638 ATACCTTCCTTGTCCTGGATCTTTTGCTTGACATTGTCGATGGAATCCGACGACTCGACC 195697 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || |||| || |||||||| |||||||| Sbjct 195698 TCGAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 195744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405087264385510