Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq29 140 2e-28 seq30 111 1e-19 seq45 109 4e-19 seq51 104 2e-17 seq56 91.5 1e-13 >seq29 Length=462624 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 282662 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 282721 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 282722 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 282756 >seq30 Length=460931 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | ||||||||| || ||| |||||||||||| ||||| |||| Sbjct 195744 TACCACCACGGAGACGGAGCACCAAATGCAGCGTGGACTCCTTTTGAATGTTGTAGTCAG 195803 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | || |||| || ||||| || ||||| || || ||||| || || || | || Sbjct 195804 AGAGCGTGCGGCCGTCTTCCAATTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGGG 195863 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||| ||||| ||| |||||||| ||||| | || | ||| ||| | Sbjct 195864 GAATGCCTTCCTTGTCTTGAATCTTTTGCTTGACATTGTCGATCGAATCGGACGATTCGA 195923 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || || || || || | || || || || || ||||| Sbjct 195924 CTTCCAAAGTGATGGTCTTGCCAGTGAGCGTCTTGACAAAGATTTGCAT 195972 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | ||||| || || || |||||||| || |||||||||| Sbjct 195972 TACCACCACGGAGACGGAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAATCAG 196031 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| || | || || ||||| || |||||||| || ||||| || || |||| | Sbjct 196032 ACAAGGTGCGGCCATCTTCCAATTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGAG 196091 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC-TTTCA 38267 ||| |||||| |||||| || |||||||| ||||| | | | ||| | || || Sbjct 196092 GGATGCCTTCCTTGTCCTGGATCTTTTGCTTGACATTATCAATGGAATC-CGACGACTCG 196150 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | || || || || || ||||| || || || || |||||||| Sbjct 196151 ACCTCGAGCGTGATGGTCTTGCCAGTCAAAGTCTTAACAAAGATCTGCAT 196200 >seq45 Length=303593 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| | ||||| || | ||| ||||| || || |||||||||||| Sbjct 87338 CCACCACGGAGACGGAGGACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAATCAGAC 87279 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || || |||| || ||||| || |||||||| || ||||| || || |||| ||| Sbjct 87278 AAGGTGCGGCCGTCTTCCAATTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGGA 87219 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| ||||| || |||||||| ||||| | || | || ||| || Sbjct 87218 ATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTGTCGATGGAGTCGGACGATTCGACC 87159 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || || || || || || |||||||| || || || ||||||||| Sbjct 87158 TCCAAAGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCATG 87111 >seq51 Length=272779 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 272074 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 272015 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 272014 GCCAATATTTAGCTTTA 271998 >seq56 Length=224513 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || || | ||| |||| ||||| || | || ||||||||| || |||||||| ||| Sbjct 32427 CCGCCGCGCAATCGCAGCACCAGGTGCAACGTCGACTCCTTTTGGATGTTGTAATCCGAC 32486 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || ||||| || |||||||| || || ||||| ||||| | || Sbjct 32487 AGCGTGCGGCCATCCTCCAATTGCTTGCCGGCAAAGATGAGTCGTTGCTGATCAGGCGGA 32546 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC-TTTCAAC 38269 | || || ||||| || |||||||||||||| | | | ||| | || |||||| Sbjct 32547 ATACCCTCCTTGTCTTGGATCTTTTGCTTCACATTATCAATTGAATC-CGACGATTCAAC 32605 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | ||| || || || || || | || || ||||| || |||||| Sbjct 32606 CTCAAGTGTGATGGTCTTGCCAGTGAGCGTCTTGACGAAGATTTGCATG 32654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946591756819