Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq45 147 2e-30 seq30 147 2e-30 seq56 113 4e-20 >seq45 Length=303593 Score = 147 bits (162), Expect = 2e-30 Identities = 162/214 (76%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||||||| || ||||||| | || || || ||||| Sbjct 87340 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACTTTGGAGGTCGAATCGTCC 87399 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || | ||||| || || |||||||| ||| ||||| ||||| || || || |||| Sbjct 87400 GATTCCATCGA--CAATGTCAAGCAAAAGATCCAAGACAAGGAAGGCATCCCTCCCGACC 87457 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||||| | || ||||||||||||||||| ||||| | ||||| | ||| |||| Sbjct 87458 AACAGCGCCTCATCTTTGCCGGCAAACAATTGGAAGACGGCCGCACGCTTTCCGACTACA 87517 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || ||||| ||||||||||| || || || || Sbjct 87518 ACATCCAAAAGGAATCCACGCTCCACTTGGTCCT 87551 Score = 141 bits (156), Expect = 8e-29 Identities = 161/214 (75%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || || || |||||||| |||| ||||||||||| Sbjct 86884 ATGCAAATCTTCGTCAAGACGCTCACTGGCAAGACCATCACACTCGAGGTGGAGTCGTCC 86943 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| | || || || || ||||| ||||| ||||| ||||| || || ||||||| Sbjct 86944 GACTCCATTGA--CAATGTCAAGCAGAAAATTCAAGACAAGGAAGGCATCCCTCCTGACC 87001 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | ||||| |||||||| ||||| || |||| ||||| | || |||| Sbjct 87002 AGCAGCGTTTGATTTTCGCCGGCAAGCAATTGGAGGATGGCCGCACGCTCTCTGACTACA 87061 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | |||||||| ||||||||||| || || || || Sbjct 87062 ACATTCAAAAGGAATCCACGCTCCACTTGGTTCT 87095 Score = 138 bits (152), Expect = 1e-27 Identities = 151/199 (76%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||||||| || ||||||| | || || || ||||| Sbjct 87112 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACTTTGGAGGTCGAATCGTCC 87171 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| | ||||| || || |||||||| ||| ||||| ||||| ||||| || |||| Sbjct 87172 GACTCCATCGA--CAATGTCAAGCAAAAGATCCAAGACAAGGAAGGCATTCCCCCCGACC 87229 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || ||||||||||| ||||| ||||| | ||||| || ||||||| Sbjct 87230 AGCAGCGCCTCATCTTTGCCGGCAAGCAATTGGAAGACGGCCGCACCTTGTCTGATTACA 87289 Query 25177 ATATTCAAAAAGAATCCAC 25195 | || || || |||||||| Sbjct 87290 ACATCCAGAAGGAATCCAC 87308 Score = 120 bits (132), Expect = 3e-22 Identities = 156/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| | || ||||||||||| Sbjct 86656 ATGCAGATTTTCGTCAAGACGCTCACTGGCAAGACCATCACCTTGGAGGTGGAGTCGTCC 86715 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || | ||||| || || |||||||| ||| ||||| ||||| || || ||||||| Sbjct 86716 GATTCCATCGA--CAATGTCAAGCAAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACC 86773 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | ||||| |||||||| || | || |||| ||||| | || |||| Sbjct 86774 AGCAGCGCCTCATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCTCTGACTACA 86833 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || ||||| ||||||||||| || || || || Sbjct 86834 ACATCCAAAAGGAATCCACGCTCCACTTGGTCCT 86867 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || |||||||| || || |||||| | || || || ||||||| | || || |||||| Sbjct 86425 ACTATGCAAATTTTCGTCAAGACTCTCACTGGCAAGACCATCACTCTGGAGGTCGAGTCG 86484 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || ||||||| | ||||| |||||| ||||| || || ||||| || || Sbjct 86485 TCCGATTCTATCGACAACGTCAAGCAGAAAATCCAAGACAAGGAGGGCATTCCCCCCGAT 86544 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | |||||||||||||| || | || || | ||||| || || ||| Sbjct 86545 CAGCAGCGTTTGATTTTTGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGTCTGACTAC 86604 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| || ||||| || || || || || Sbjct 86605 AACATCCAAAAGGAGTCCACTCTGCACTTGGTTCT 86639 >seq30 Length=460931 Score = 147 bits (162), Expect = 2e-30 Identities = 162/214 (76%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || || ||||||| |||| || |||||||| Sbjct 195744 ATGCAGATCTTTGTCAAGACTTTGACTGGCAAGACCATCACCCTCGAGGTCGAGTCGTCG 195685 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || | ||||| || || |||||||| ||| ||||| ||||| || || || |||| Sbjct 195684 GATTCCATCGA--CAATGTCAAGCAAAAGATCCAGGACAAGGAAGGTATCCCTCCCGACC 195627 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| |||| ||||||||||| || | || |||| ||||| || ||| |||| Sbjct 195626 AGCAGCGCCTTATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTGTCCGACTACA 195567 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || ||||| ||||||||||| || || || || Sbjct 195566 ACATCCAAAAGGAATCCACGCTCCACTTGGTCCT 195533 Score = 140 bits (154), Expect = 3e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || || ||||||| |||| || |||||||| Sbjct 196200 ATGCAGATCTTTGTTAAGACTTTGACTGGCAAGACCATCACGCTCGAGGTCGAGTCGTCG 196141 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || | || || | |||||||| ||| ||||| ||||| || || || ||||| Sbjct 196140 GATTCCATTGATAATGTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCTCCCGACCAG 196081 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| ||||| ||||||| ||||| || |||||||| Sbjct 196080 CAGCGCCTCATCTTTGCCGGCAAGCAATTGGAAGATGGCCGCACCTTGTCTGATTACAAC 196021 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| ||||| || || || || || || Sbjct 196020 ATCCAAAAGGAATCTACCCTCCACTTGGTCCT 195989 Score = 123 bits (136), Expect = 2e-23 Identities = 157/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||| | || || || ||||||| | || || |||||||| Sbjct 196428 ATGCAAATTTTCGTCAAGACTCTCACTGGCAAGACCATCACTCTGGAGGTCGAGTCGTCG 196369 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| |||| || || || |||||||| || ||||| || || ||||| || |||| Sbjct 196368 GACTCTATTGA--CAATGTCAAGCAAAAGATTCAAGACAAGGAGGGTATTCCCCCCGACC 196311 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| |||| ||||||||||| || | || |||| ||||| || || |||| Sbjct 196310 AGCAGCGCCTTATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTGTCTGACTACA 196251 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || ||||| || |||||| | || || ||||| Sbjct 196250 ACATCCAAAAGGAGTCCACGTTGCACTTGGTGCT 196217 >seq56 Length=224513 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || || || |||||||| | || || || ||||| Sbjct 32653 ATGCAAATCTTCGTCAAGACGCTCACTGGCAAGACCATCACACTTGAGGTTGAATCGTCG 32594 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || | || || |||||||||| ||| ||||| || || ||||| ||||| || Sbjct 32593 GATTCAATTGATAATGTGAAGCAAAAGATCCAAGACAAGGAGGGTATTCCGCCTGATCAG 32534 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||||||||| ||||| || |||| ||||| || |||||||| Sbjct 32533 CAACGACTCATCTTTGCCGGCAAGCAATTGGAGGATGGCCGCACGCTGTCGGATTACAAC 32474 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || || ||| | || | ||||| Sbjct 32473 ATCCAAAAGGAGTCGACGTTGCACCTGGTGCT 32442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327213103435