Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq56 149 5e-31 seq45 149 5e-31 seq30 149 5e-31 seq61 113 4e-20 seq1 104 2e-17 seq94 91.5 1e-13 >seq56 Length=224513 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || || |||| ||||| || ||| | | Sbjct 32653 ATGCAAATCTTCGTCAAGACGCTCACTGGCAAGACCATCACACTTGAGGTTGAATCGTCG 32594 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | | || || | || ||||| || |||||||||||||||||||| || ||||| Sbjct 32593 GATTCAATTGATAATGTGAAGCAAAAGATCCAAGACAAGGAGGGTATTCCGCCTGATCAG 32534 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || ||||||||||| || || |||||| |||||| | || ||||||||| Sbjct 32533 CAACGACTCATCTTTGCCGGCAAGCAATTGGAGGATGGCCGCACGCTGTCGGATTACAAC 32474 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || ||||| || || || | || | || ||||||||||||| || Sbjct 32473 ATCCAAAAGGAGTCGACGTTGCACCTGGTGCTGCGATTGCGCGGCGG 32427 >seq45 Length=303593 Score = 149 bits (164), Expect = 5e-31 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || ||||| || || ||||| | || || ||| | || Sbjct 87340 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACTTTGGAGGTCGAATCGTCC 87399 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| || | ||| || |||| ||||| || ||||||||||| || || || ||||| ||| Sbjct 87400 GATTCCATCGACAATGTCAAGCAAAAGATCCAAGACAAGGAAGGCATCCCTCCCGACCAA 87459 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || |||||||||||||| || || || |||||| | ||||| |||||| Sbjct 87460 CAGCGCCTCATCTTTGCCGGCAAACAATTGGAAGACGGCCGCACGCTTTCCGACTACAAC 87519 Query 22399 ATTCAAAAAGAATCCAC 22415 || ||||| |||||||| Sbjct 87520 ATCCAAAAGGAATCCAC 87536 Score = 145 bits (160), Expect = 6e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || ||| | || || || || ||||||| || || || | || Sbjct 86428 ATGCAAATTTTCGTCAAGACTCTCACTGGCAAGACCATCACTCTGGAGGTCGAGTCGTCC 86487 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | | ||| | |||| || ||||| |||||||||||||| ||||| |||||||| Sbjct 86488 GATTCTATCGACAACGTCAAGCAGAAAATCCAAGACAAGGAGGGCATTCCCCCCGATCAG 86547 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||||||||| ||| | ||||| |||||| | || || |||||| Sbjct 86548 CAGCGTTTGATTTTTGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGTCTGACTACAAC 86607 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| || ||||| | || || ||| |||| | || || ||| Sbjct 86608 ATCCAAAAGGAGTCCACTCTGCACTTGGTTCTGCGTCTCCGTGGTGGT 86655 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || || |||| || || ||||| | || Sbjct 86884 ATGCAAATCTTCGTCAAGACGCTCACTGGCAAGACCATCACACTCGAGGTGGAGTCGTCC 86943 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || ||||||||||||||||| || || || || || || Sbjct 86944 GACTCCATTGACAATGTCAAGCAGAAAATTCAAGACAAGGAAGGCATCCCTCCTGACCAG 87003 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || |||||||| || || |||||| |||||| |||| || |||||| Sbjct 87004 CAGCGTTTGATTTTCGCCGGCAAGCAATTGGAGGATGGCCGCACGCTCTCTGACTACAAC 87063 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||| |||||||| | || || ||| | || ||||||| || Sbjct 87064 ATTCAAAAGGAATCCACGCTCCACTTGGTTCTCCGCCTGCGCGGTGG 87110 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || ||||| || || ||||| | || || ||| | || Sbjct 87112 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACTTTGGAGGTCGAATCGTCC 87171 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| ||||| || ||||||||||| || ||||| ||||| || Sbjct 87172 GACTCCATCGACAATGTCAAGCAAAAGATCCAAGACAAGGAAGGCATTCCCCCCGACCAG 87231 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||||||||| || || || || ||||||| | || ||||||||| Sbjct 87232 CAGCGCCTCATCTTTGCCGGCAAGCAATTGGAAGACGGCCGCACCTTGTCTGATTACAAC 87291 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || || || ||||||||| | || || || Sbjct 87292 ATCCAGAAGGAATCCACCTTGCACTTGGT 87320 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | || || || || |||| | || ||||| | || Sbjct 86656 ATGCAGATTTTCGTCAAGACGCTCACTGGCAAGACCATCACCTTGGAGGTGGAGTCGTCC 86715 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| || | ||| || |||| ||||| || ||||||||||| || || || || || || Sbjct 86716 GATTCCATCGACAATGTCAAGCAAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAG 86775 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | |||||| |||||| |||| || |||||| Sbjct 86776 CAGCGCCTCATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCTCTGACTACAAC 86835 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || ||||| |||||||| | || || || | || ||||||| || Sbjct 86836 ATCCAAAAGGAATCCACGCTCCACTTGGTCCTCCGTCTGCGCGGTGG 86882 >seq30 Length=460931 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||||| || || || || |||| || || || || | | Sbjct 195744 ATGCAGATCTTTGTCAAGACTTTGACTGGCAAGACCATCACCCTCGAGGTCGAGTCGTCG 195685 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| || | ||| || |||| ||||| || || |||||||| ||||| || ||||| || Sbjct 195684 GATTCCATCGACAATGTCAAGCAAAAGATCCAGGACAAGGAAGGTATCCCTCCCGACCAG 195625 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || ||||| ||||||||||| ||| | |||||| |||||| | ||||| |||||| Sbjct 195624 CAGCGCCTTATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTGTCCGACTACAAC 195565 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || ||||| |||||||| | || || || |||| | ||||| || Sbjct 195564 ATCCAAAAGGAATCCACGCTCCACTTGGTCCTGCGTCTCCGCGGTGG 195518 Score = 149 bits (164), Expect = 5e-31 Identities = 153/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||||||||| || || ||| | || || || || ||||||| || || || | Sbjct 196431 AACATGCAAATTTTCGTCAAGACTCTCACTGGCAAGACCATCACTCTGGAGGTCGAGTCG 196372 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || | | ||| || |||| ||||| ||||||||||||||||||||||| ||||| Sbjct 196371 TCGGACTCTATTGACAATGTCAAGCAAAAGATTCAAGACAAGGAGGGTATTCCCCCCGAC 196312 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || ||||| ||||||||||| ||| | |||||| |||||| | || || ||| Sbjct 196311 CAGCAGCGCCTTATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTGTCTGACTAC 196252 Query 22396 AACATTCAAAAAGAATCCAC 22415 ||||| ||||| || ||||| Sbjct 196251 AACATCCAAAAGGAGTCCAC 196232 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | || || || || ||||| | ||||| ||| | || Sbjct 195972 ATGCAAATCTTTGTCAAGACGCTCACTGGCAAGACCATCACTTTGGAAGTCGAATCGTCC 195913 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | | ||| || |||| ||||| |||||||||||||| || ||||| || || || Sbjct 195912 GATTCGATCGACAATGTCAAGCAAAAGATTCAAGACAAGGAAGGCATTCCCCCTGACCAG 195853 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| || || || || |||||| |||| || |||||| Sbjct 195852 CAGCGCCTCATTTTCGCCGGCAAGCAATTGGAAGACGGCCGCACGCTCTCTGACTACAAC 195793 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 |||||||| || ||||| | ||||| || Sbjct 195792 ATTCAAAAGGAGTCCACGCTGCATTTGGT 195764 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || |||||||| ||||| || || || || |||| || || || || | | Sbjct 196200 ATGCAGATCTTTGTTAAGACTTTGACTGGCAAGACCATCACGCTCGAGGTCGAGTCGTCG 196141 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| || | || || |||| ||||| || || |||||||| || || || ||||| || Sbjct 196140 GATTCCATTGATAATGTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCTCCCGACCAG 196081 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||||||||| || || || ||| ||||||| | || ||||||||| Sbjct 196080 CAGCGCCTCATCTTTGCCGGCAAGCAATTGGAAGATGGCCGCACCTTGTCTGATTACAAC 196021 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || ||||| ||||| ||| | || || || Sbjct 196020 ATCCAAAAGGAATCTACCCTCCACTTGGT 195992 >seq61 Length=186913 Score = 113 bits (124), Expect = 4e-20 Identities = 405/629 (64%), Gaps = 27/629 (4%) Strand=Plus/Plus Query 130006 CCATCCGCTTCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCT 130065 |||| || ||||| || ||||| |||||||| || ||||| || ||||| |||||||| Sbjct 184523 CCATTGGCCTCGACACGCTTCATGAACAAATCAGGCACCCAGAGCGCGTAAAACAAATCG 184582 Query 130066 CGCGCTTTTCTATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCG 130125 ||||| | || || |||| ||| || ||| | || | |||||||| Sbjct 184583 CGCGCGCGGATCTCGTCCTTGCCCACGTTCTTGCGCAATTCCAAAAAGGTGAAAATGTCG 184642 Query 130126 GCGTGCCACGGTTCAACATAAATTGCCATTGCGCCCTTCCGTTTG---CCCCCTTGGTCA 130182 |||||||| || || | || || || | || ||| || ||| || ||||||||| Sbjct 184643 GCGTGCCAAGGCTCGAGGTACATGGCAAACGCACCCGGGCGCTTGTTCCCTCCTTGGTCA 184702 Query 130183 ACGTGGCGCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCG 130242 |||| |||| | | |||||| | || |||| ||| | | || || ||||||||||| Sbjct 184703 ACGTAGCGCGCCGTGTTGTTGAACACGCGCAGCATAGGCAACAGACCATTGGCCGTGCCA 184762 Query 130243 TTTGTGCTCTCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCG 130302 || |||| ||||| | ||| || || | ||| || | | | | || |||||| Sbjct 184763 TTGGTGCCGGCAATGTACGAGCCCGTGGCGCGGATGTTGTGGATGTTCAAGCCAATGCCG 184822 Query 130303 CCGCCAAATTTTGATATCAACGCGCAATCGCGT-AGCGTTTCATAAATGCCAACGATACT 130361 ||| | || || || ||| | | | | | ||||| || || ||||| | || Sbjct 184823 CCGGCCGTCTTGGAGATTTGCGCAC-AGCACTTGAGCGTCTCGTAGATGCCCTCAATCGA 184881 Query 130362 GTCTTCTTTAATGTTTAGGAGGAAACACGAGGCCAATT--GGGCGTAACATGATCCGCTG 130419 ||| || || || | || | ||| ||||| | || || ||||| | | || | Sbjct 184882 GTCCTCCTTCATAGTCAGCAAGAAGCACGACGACATTTGCGGGCGAGGCGT-----GCCG 184936 Query 130420 GCA---AACAAAGTTGGACTTGCATGTGTATACATTTTGTGTGCCATCAAATTGTACGTT 130476 ||| ||||| || || || || || || | | | | | ||| | | |||||| Sbjct 184937 GCATTGAACAACGTCGGGCTCGCGTGCGTGAAGAATCGCTCCGACATGAGCTGGTACGTC 184996 Query 130477 TCAAAAACGTTTTCAATGCAATCGTCGGTGTCGTTGCCGTGTATGGTTAGAGCCACACGC 130536 || ||| || ||| || |||| | ||| || || | |||||||||| Sbjct 184997 TCCAAAGCG--------GCA----TCAATGTCTTCGCCATGGATACCAACAGCCACACGC 185044 Query 130537 ATGTACATATGTTGAATGCGCTCCGCCACTTTCCCCTCAATCGTTTTCAAGTAACCATTT 130596 ||| || ||| || ||||||||||| || || | ||| | ||| || | Sbjct 185045 ATGATCAAATGCTGCGGACGCTCCGCCACCTTGCCATTGATCTTGAGCAAATATGAACGC 185104 Query 130597 TCGAGAGTTTTAAATCCAAAATATTTGTA 130625 ||||| || || || |||||||| ||||| Sbjct 185105 TCGAGCGTCTTGAAACCAAAATAGTTGTA 185133 >seq1 Length=1252801 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22288 GACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTT 22347 ||| || |||| ||||| || ||||||||||| |||||||| ||||| || || || | Sbjct 333663 GACAATGTCAAGCAAAAGATCCAAGACAAGGAAGGTATTCCCCCCGACCAGCAGCGCTTG 333604 Query 22348 ATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAA 22407 || || || ||||| ||||| || || ||||||| | ||||| |||||||| || || Sbjct 333603 ATCTTCGCTGGCAAGCAGTTGGAAGACGGCCGCACCTTGTCCGACTACAACATCCAGAAG 333544 Query 22408 GAATCCACCATACATTTAGT 22427 || |||||| | || || || Sbjct 333543 GAGTCCACCCTCCACTTGGT 333524 >seq94 Length=66050 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 22288 GACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTT 22347 ||| || |||| ||||| || |||||||||||||| || || || || || || || | Sbjct 22956 GACAATGTCAAGCAAAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCTTG 22897 Query 22348 ATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAA 22407 || || |||||||| || || || ||| |||||| | || || |||||||| ||||| Sbjct 22896 ATCTTCGCCGGCAAGCAATTGGAAGATGGCCGCACGTTGTCTGACTACAACATCCAAAAG 22837 Query 22408 GAATCCAC 22415 ||||| || Sbjct 22836 GAATCGAC 22829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727237800185