Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq33 147 4e-30 seq84 125 1e-23 seq77 125 1e-23 seq67 98.7 2e-15 >seq33 Length=455653 Score = 147 bits (162), Expect = 4e-30 Identities = 324/478 (68%), Gaps = 6/478 (1%) Strand=Plus/Plus Query 251524 TTCATCACACCTGGACGTTGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCC 251583 ||||| || || | ||| || || ||||| ||||| || |||||||| | ||||||| Sbjct 390774 TTCATGACGCCAGCACGCTGGTAGTCAGAGACACGCTTCTCAAAGAAATTGGTCTTGCCC 390833 Query 251584 TCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGG 251643 | || ||||| || ||||| ||||| ||||| || || || ||||| |||||| ||| Sbjct 390834 TGGAGCGAGATGAGGTCCATAAAGTCAAAGGGATTGGTTGCCTTGTAGTGCTTGTCCTGG 390893 Query 251644 CCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAG 251703 ||||| || |||| | |||||| || ||||| || | || || | ||| || | ||| Sbjct 390894 CCAAGAGCAACGAGCAGGCGGTCCGCAACAAATTCAATGTATTGGCACATGAGCTTGGAG 390953 Query 251704 TTCATGCCAATCA-TACGACAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAAC 251762 ||||||||||| | |||| ||| | || || | |||||| | || | || Sbjct 390954 TTCATGCCAATGAGCGCGAC-AGGCAGCGCGTCGGTCAGGAATTCTTGCTCAATCTTGAC 391012 Query 251763 TGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGCTTGTTCTCCAGCTTTGAGTA 251822 ||||| | || | ||| | | || || |||| ||| | | Sbjct 391013 GGCCTCGGTGATGATATCGCGCACACGGTCATTGGAAGGCGTGTTGCGCAGATGGCCAAA 391072 Query 251823 CAGGA-GCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACA 251881 || | || || |||| | ||||| ||||||||| || | || | ||||||||| | Sbjct 391073 GAGCAGGCACG-CAAAGTCCGTGTGCAAACCCTCGTCACGGCAAATCAGCTCGTTGGAGA 391131 Query 251882 GACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAGATTG-CGCAAAAGGATCCA 251940 || ||||||||||| || || ||| ||||||| ||||| | |||||| | | ||| Sbjct 391132 ACGTCAAGCCAGGCATCAAGCCGCGCTTCTTGAGCCAAAAGATGGACGCAAACGCA-CCA 391190 Query 251941 GAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCGCTCAGCAAACGACTTGT 251998 ||||| | | ||||| || | | | |||||||||||||| ||||||| |||| Sbjct 391191 GAGAAGAAAATGCCCTCAACCGCCGCAAAAGCAACAAGGCGCTCGGCAAACGTGTTGT 391248 >seq84 Length=91516 Score = 125 bits (138), Expect = 1e-23 Identities = 128/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 280194 GGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCCACTGAGGGGTCCGTT 280253 || ||||| || | ||||| || ||||||| |||| | || || || ||||| Sbjct 51345 GGCAAGTCCACTTTGATCAAGCTCTTGACTGGTGAGATCGAGTCCGACATTGGTTCCGTC 51286 Query 280254 TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAG 280313 |||||||| |||||| |||| || || || ||||| |||||||| |||||||| || ||| Sbjct 51285 TGGAAGCACCCCAACTTGCGTATTGCCTATGTCGCCCAGCACGCCTTCCACCATATTGAG 51226 Query 280314 AACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTATGC 280360 || ||| ||||||| || || ||| | ||||| || ||||||||||| Sbjct 51225 AAGCACTTGGACATCACCCCCAACGAGTACATCCAATGGCGCTATGC 51179 Score = 98.7 bits (108), Expect = 2e-15 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 279705 CTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGAT 279764 || || ||||| |||||||||||||| ||||| | || ||||| | || ||||| Sbjct 51913 CTCTCTGGTGGCTGGAAGATGAAGCTCGCCCTTGCCCGTGCCATGTTGATGAACGCCGAC 51854 Query 279765 GTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTG 279824 | | || | || || || ||||| ||| ||||| |||||| |||||| | | | Sbjct 51853 ATTTTGCTCTTGGACGAACCTACCAATCACTTGGACGTTGTCAACGTTGCCTGGTTGGAG 51794 Query 279825 TCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTC 279884 |||||| | ||||||| || | ||| |||| || || ||||||||||||||| Sbjct 51793 AACTACCTCTTGGGCCTGAAGACCGTCACCTCCATCATCGTGTCCCACGACTCTGGCTTC 51734 Query 279885 CTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGC 279921 | || ||| || || | |||||| || ||||||| Sbjct 51733 TTGGACCACGTCTGTTCCGACATCATCCATTATGAGC 51697 >seq77 Length=108250 Score = 125 bits (138), Expect = 1e-23 Identities = 270/401 (67%), Gaps = 12/401 (3%) Strand=Plus/Minus Query 279691 TGCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTC 279750 |||| | || || || || || |||||||||||||| |||| || | |||||||| Sbjct 89481 TGCCCATTGGCTCGCTTTCTGGCGGTTGGAAGATGAAATTGGCTCTTGCGCGCGCCATGT 89422 Query 279751 TACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACG 279810 | || |||||| | | ||||| |||||||| ||||| ||| |||| ||| | Sbjct 89421 TGATGAATGCCGACATTTTGCTGCTCGATGAGCCGACCAATCACTTGGATGTGGTCAATG 89362 Query 279811 TAGCCTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTC 279870 | |||||||| | | ||| | | || |||| || | ||| |||| || || | Sbjct 89361 TGGCCTGGCTCGAGAACTATTTGCTTGGGCTCAAGACGGTCACGTCCATCATCGTGTCGC 89302 Query 279871 ACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGA 279930 ||||||| |||||||| || ||||||||| | |||||| ||||| ||| ||| | Sbjct 89301 ACGACTCGGGCTTCCTCGACCACGTGTGCTCAGACATCATCCACTACGAGGGCAATTACA 89242 Query 279931 AGCTCTCCAAGC---ACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGG 279987 |||| ||||| ||| ||||| ||||| | || ||| |||| || |||| | Sbjct 89241 AGCT---CAAGCGCTACAAGGGCAATCTGTCGGAATTTGTGAAAAAGGTGCCAAAGGCCG 89185 Query 279988 CCGCCTACTATGACCTGAAGGACGC---CACCGCCAAGTGGGAATTCCCTGAGCCAGGGT 280044 | | ||||| || ||| ||| | | || | | ||||| ||||| || | Sbjct 89184 CGTCGTACTACTCGCTCGAGGCCGCGCAAATCTCC---TTCAACTTCCCCGAGCCCGGCT 89128 Query 280045 TTCTGGAGGGCATCACATCAAAGGATCGCGCAATCATGAAG 280085 || |||| ||||||| ||||||| || || ||| | ||| Sbjct 89127 TTTTGGAAGGCATCAAGACAAAGGAACGAGCCATCCTCAAG 89087 Score = 116 bits (128), Expect = 8e-21 Identities = 465/712 (65%), Gaps = 55/712 (8%) Strand=Plus/Minus Query 280194 GGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCCACTGAG---GGGTCC 280250 || || || || || ||||| | |||| ||||||| | || | |||| || | Sbjct 88797 GGCAAATCGACGCTGATCAAGCTTTTGACGGGCGAGATCGAGTC---TGAGATTGGCACG 88741 Query 280251 GTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACATC 280310 || ||||||||||| || |||| || || ||||| || |||||||| ||||| ||||| Sbjct 88740 GTGTGGAAGCATCCGAATTTGCGCATTGCGTACGTGGCGCAGCACGCGTTCCATCACATT 88681 Query 280311 GAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTATGCAA-----GTG 280365 || || |||||||||| || || ||| | ||||| || ||||||||||| | | | Sbjct 88680 GAAAAGCACCTGGACAGCACGCCCAACGAGTACATCCAATGGCGCTATGCGACAGGCGAG 88621 Query 280366 GGC----AGGATCTGGAGTCGGTGGATCGCTCTGAACGCAATGCCGCCGATACCGCCAAG 280421 | | |||| ||||| |||||||||| | | | | || | || | ||| Sbjct 88620 GACCGTGAGGAGCTGGAAAAGGTGGATCGCA-TCATCAC--TGAGGAAGAA---GAAAAG 88567 Query 280422 ATGTATGAGGTCAAGG---TCATCGATGGTGTCAAGAAGTCTCTCGAC--CGCATTGGAG 280476 | |||| ||||| ||||| || | | ||||| ||| || ||||| | Sbjct 88566 CAG-ATGAC--CAAGGAATTCATCATTGAAGGCGAGAAGCGCGTCGTGGACGAATTGGTG 88510 Query 280477 GC-CGCAGGAAGCTAAAGCGCTCCTATGAGTATGAGGTGTTCTGGAAGAATGACGAG-AC 280534 | ||| | ||||| |||| || || ||||| ||||||| ||| | | || | Sbjct 88509 GGTCGCCGCAAGCTCAAGCAATCGTACGAGTACGAGGTGTCGTGG--GTTGGCCGCTCAT 88452 Query 280535 CT-----CAA--CTTGGATTGTCCGCGAGACCCTGGAGCAGCTTGGCTTCC---AAAAGC 280584 || ||| | ||||| || | | || ||| | | |||||| ||||| Sbjct 88451 CTGTCGACAATACGTGGATCTCGCGTCAAAAACTCGAGAACATGGGCTTCGCCAAAAAGA 88392 Query 280585 TCCTCAATGACATCGACGCCAAGGATGCCGCTGCCAA--TGGTCTGCTAGGGAAACCTCT 280642 | | | | | |||||| ||| ||||| ||| ||| | | | | || || Sbjct 88391 TTGCCGAAG---TTGACGCCTTGGAGGCCGC---CAAGCTGGGCCTCAATCGC--CCCCT 88340 Query 280643 GACTGC-CAAGAATGTTGAGGACCATATGACCAAGCTGGGTCTGGACCCCGAGTTTACAA 280701 ||| || | ||| |||| | ||| ||||| || | || || || |||| || | | Sbjct 88339 GACCGCACGCGAAA-TTGAAAAGCATCTGACCGAGGTCGGCCTCGAGGCCGAATTCGCCA 88281 Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAG 280761 | ||||| ||||| || ||||| || || ||||| |||||||| || ||||| || || | Sbjct 88280 CCCACTCGCGCATCCGTGGTCTCTCCGGCGGCCAAAAGGTCAAGCTCGTCATTGGCGCCG 88221 Query 280762 CTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCG 280821 | ||||| | | ||| ||| || |||| ||||| || || ||||| || || || || | Sbjct 88220 CCATGTGGAATCGCCCGCACATGCTCGTCCTCGATGAACCCACCAATTACCTCGATCGTG 88161 Query 280822 AGAGCCTGGGCGCTCTGAGTGCTGCTCTGGACACATTTGGCGGCGGCGTCGT 280873 || ||| ||||| || | || | || | ||||||||||||||| Sbjct 88160 AGTCCCTCGGCGCCCTCGCCACCGCCATCCGCAACTATGGCGGCGGCGTCGT 88109 >seq67 Length=144240 Score = 98.7 bits (108), Expect = 2e-15 Identities = 233/345 (68%), Gaps = 8/345 (2%) Strand=Plus/Minus Query 217837 TGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGCC 217896 ||||| || || ||||| ||||| ||||| || || ||| | |||||| | Sbjct 132970 TGCACGCTGATTCTGACCGAGGGTGACTCTGCCAAGACATTGGTGCTCAGTGGTCTGTCG 132911 Query 217897 GTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCGC 217956 |||||||| ||||| ||||||| | |||||| | || || |||||||||||||||||| Sbjct 132910 GTGGTGGGCCGTGACCTGTATGGTGTGTTCCCCTTGCGCGGCAAGCTGCTCAACGTGCGC 132851 Query 217957 GATGCCTCGGTTTCAAGCATTGCT--GCAA-ATGCAGAGATTGCCGCCATCAAGCAAATC 218013 || ||| | ||| || | | |||| | | || || || | ||||||||||| Sbjct 132850 GACGCCAC-CAATCAGGCCATCATGAGCAACAAG--GAAATCACCTTCGTCAAGCAAATC 132794 Query 218014 CTGGGTCTTCAGGTTGGAAAGACTTACAAGGATG-CGTCATCTCTGCGTTATGGCTCTGT 218072 || || || || || | ||| |||| | | || | | |||| || ||| | Sbjct 132793 CTTGGCCTCAAGCACGGCATGACCTACACCAACGTCGACCAAT-TGCGCTACGGCAAGCT 132735 Query 218073 CATGCTTATGACTGATGCTGATGTTGACGGGTCCCACATTTCCGCCCTCGTTATGAACTT 218132 |||| | ||||| ||| ||| ||||| |||||||| | |||||| || ||||| Sbjct 132734 CATGATCATGACCGATCAGGATTACGACGGCTCCCACATCAAGGGCCTCGTCATCAACTT 132675 Query 218133 CTTCCACGCCCAGTTCCCCAGCCTCCTCGCCGTCCCAGGGTTCCT 218177 || || |||||| ||| | |||| | |||| || ||||| Sbjct 132674 TCTCGACAAAATGTTCCCAAGCTTGCTCGACATCCCTGGCTTCCT 132630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027834837795309