Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq45 132 4e-26 seq30 122 7e-23 >seq45 Length=303593 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 |||||||| || | | || || || | ||| ||||| ||||| |||||||| ||| Sbjct 87566 CCGCCACGGAGACGGAGGACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCGGAA 87507 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || || ||||| | |||||| || || ||||||| ||||||||||| ||||| Sbjct 87506 AGCGTGCGGCCGTCTTCCAATTGTTTGCCGGCAAAGATGAGGCGCTGTTGGTCGGGAGGG 87447 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 |||||||| ||||| |||||||| || | | || | || |||| |||||||| Sbjct 87446 ATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTGTCGATGGAATCGGACGATTCGACC 87387 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 |||| || | || |||||||||| || || ||||| ||||||||| Sbjct 87386 TCCAAAGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCATG 87339 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || || || | || ||||| || || ||||||||||| Sbjct 87341 ATGCCACCACGGAGACGGAGGACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAATCA 87282 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| | ||| || || || ||||||| ||||| ||||| || Sbjct 87281 GACAAGGTGCGGCCGTCTTCCAATTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGG 87222 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| |||||||| || | | || | || ||||| |||||| Sbjct 87221 GGAATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTGTCGATGGAGTCGGACGATTCG 87162 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| || | || |||||||||| || || ||||| ||||||||| Sbjct 87161 ACCTCCAAAGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCATG 87111 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || || || | ||| ||||| ||||| |||||||| || | || || ||| || Sbjct 86864 ACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGCGTGCGGCCATCCTCG 86805 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 || || || || ||| | ||||| ||||| ||||| ||||| |||||||| ||||| Sbjct 86804 AGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGG 86745 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 |||||||| || | | || | || |||| || || || |||| ||| | || ||| Sbjct 86744 ATCTTTTGCTTGACATTGTCGATGGAATCGGACGACTCCACCTCCAAGGTGATGGTCTTG 86685 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || || || || || ||||||||||| Sbjct 86684 CCAGTGAGCGTCTTGACGAAAATCTGCAT 86656 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| || || | ||| ||||| |||||||||||||| || | || || ||| || Sbjct 87093 AACCAAGTGGAGCGTGGATTCCTTTTGAATGTTGTAGTCAGAGAGCGTGCGGCCATCCTC 87034 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 | ||| || || ||| | || | |||||| ||||| ||||| |||||||| ||||| Sbjct 87033 CAATTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTG 86974 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||| || || || | | |||| || ||||| || || || || | || | || || Sbjct 86973 AATTTTCTGCTTGACATTGTCAATGGAGTCGGACGACTCCACCTCGAGTGTGATGGTCTT 86914 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 ||| || || || || || || || |||||| Sbjct 86913 GCCAGTGAGCGTCTTGACGAAGATTTGCATG 86883 >seq30 Length=460931 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || || || | |||||||| ||||| ||||||||||| Sbjct 195971 ATACCACCACGGAGACGGAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAATCA 196030 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| | ||| || || || ||||||| ||||| ||||| ||| Sbjct 196031 GACAAGGTGCGGCCATCTTCCAATTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGA 196090 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| ||||| |||||||| || | | |||| || || | || ||| Sbjct 196091 GGGATGCCTTCCTTGTCCTGGATCTTTTGCTTGACATTATCAATGGAATCCGACGACTCG 196150 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || ||||| |||| ||| || ||||| |||||||| Sbjct 196151 ACCTCGAGCGTGATGGTCTTGCCAGTCAAAGTCTTAACAAAGATCTGCAT 196200 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || ||||| | ||| || || |||||||||||||| || Sbjct 195743 ATACCACCACGGAGACGGAGCACCAAATGCAGCGTGGACTCCTTTTGAATGTTGTAGTCA 195802 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||||| | ||| || || ||| | ||||| ||||| ||||| || Sbjct 195803 GAGAGCGTGCGGCCGTCTTCCAATTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGG 195862 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| ||||||||| || | | || | | |||| |||||| Sbjct 195863 GGAATGCCTTCCTTGTCTTGAATCTTTTGCTTGACATTGTCGATCGAATCGGACGATTCG 195922 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || ||||| || || || || ||||| || ||||| Sbjct 195923 ACTTCCAAAGTGATGGTCTTGCCAGTGAGCGTCTTGACAAAGATTTGCAT 195972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420133637062188