Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq61 291 2e-73 seq33 230 4e-55 seq65 95.1 2e-14 >seq61 Length=186913 Score = 291 bits (322), Expect = 2e-73 Identities = 876/1330 (66%), Gaps = 53/1330 (4%) Strand=Plus/Plus Query 244300 CCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGG 244359 |||||| || |||| | | |||||| ||||||||||| || |||||| |||||| Sbjct 183847 CCACATATCGTACTGGAAGATGCCCTTGGACACGGGGCTGCCTTCATAGGTCTCGTAGGG 183906 Query 244360 ACCGTCG-CGCTGGGCCAGCTTACA--GCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTC 244416 || | | ||| | |||| || || | | || || | |||||||| ||| ||||| || Sbjct 183907 GCCTTGGACGC-GCGCCAA-TTCCATGGATGTC-TCCATGGCGGCGTGGTAAATGGTTTC 183963 Query 244417 GAAGATC---ATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCAT 244473 ||||| || ||| ||| | | ||| ||| || ||| || || ||| | Sbjct 183964 AAAGATTTGAATGTTGAGCATCTTGGCTTCCT--CCG-AGTCGAATGGATAGCGCATGAG 184020 Query 244474 CATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGA 244533 ||||||| ||| ||||| ||||| | ||| | ||| ||||| | ||| || |||||| Sbjct 184021 CATGAAGGTGTCAGCCAGGCCCTGGATGCCCAAGCCAATGGGGCGGTGGCGAAGGTTGGA 184080 Query 244534 GCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGT 244593 ||| ||| || ||||||||| | ||| | ||||| | |||||| | ||||| || Sbjct 184081 TCGCTCGGCCTCAATGACGGGGTAATAATTGACATCGATGATCTTGTTCAAATTGCGCGT 184140 Query 244594 GATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCG-A 244652 ||||| ||| || | | || || || || || | | | | || || | Sbjct 184141 GATCACCTTGACAACCTGGTGCAATTTCTTGAAATCAAACGTCTTGCGGTTGACGACGTA 184200 Query 244653 TGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCT 244712 || || ||| || | |||||||| |||||| ||||| | ||| | Sbjct 184201 TGATGGC-------AAC---------GCAATGCTGGCCAAGTTGCACACGGCAATCTCAT 184244 Query 244713 CCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGT 244772 | | | | | ||| | ||||||||| ||||| | || ||||| ||||||||||| |||| Sbjct 184245 CGGGGCTCGAGTATTCGACAATCTCCGTGCACAAATTGCTGCATTTGATGGTGCCGAGGT 184304 Query 244773 GCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCT 244832 ||| || ||||| ||| |||||| ||||||||||| | ||||| || || |||| Sbjct 184305 TCTGCTGGTTGGATTTGCGGTTGCACGCGTCCTTGTACAAGATGAACGGATTGCCCGTCT 184364 Query 244833 CGAGCTGGGCGACGAGGA-CGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCC 244891 || |||||| |||| | ||| || ||| | | ||||||| |||| ||| || Sbjct 184365 CGGTCTGGGCCTCGAGAATCGC-GTACCACAACTTTTGCGCCTTGATCGTCTGGCGCGCA 184423 Query 244892 TTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCT 244951 |||||| ||||| ||| ||||||||| || |||||| ||||||| Sbjct 184424 CGGCCCTCCTTTTCGTACTTTTCAAACAAGGCCTCGAATTCATCGCCCCACACCTCGTGC 184483 Query 244952 AGGCCGGGGCACGACG-CCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTG 245010 | |||| | || ||||| | ||| ||| ||||| | ||| ||| | || Sbjct 184484 A-AATTGGGCGCCTCGTTGGGGCAAAAGAGCGACCAGTCGCCATTGGCCTCGACACGCTT 184542 Query 245011 CATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGA 245070 |||||| | || || | |||||| || | || | || | | | ||||||| Sbjct 184543 CATGAACAAATCAGGCACCCAGAGCGCGTAAAACAAATCGCGCGCGCGGATCTCGTCCTT 184602 Query 245071 GCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTA 245130 ||| |||||| | || ||||||||| || | |||| ||||||| ||||| | ||| Sbjct 184603 GCCCACGTTCTTGCGCAATTCCAAAAAGGTGAAAATGTCGGCGTGCCAAGGCTCGAGGTA 184662 Query 245131 GACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTT 245190 | || | || || || |||||||| ||||| ||||| || | | | ||| Sbjct 184663 CATGGCAAACGCACCCGGGCGCTTGTTCCCTCCTTGGTCAACGTAGCGCGCCGTGTTGTT 184722 Query 245191 GAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGC 245250 ||| | |||||| |||||| | || || | ||| |||||||| ||||| | Sbjct 184723 GAACACGCGCAGCATAGGCAACAGACCATTGGCCGTGCCATTGGTGCCGGCAATGTACGA 184782 Query 245251 GCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAG 245310 |||| || | | || |||| |||| || ||| | |||||||| ||||||||| | Sbjct 184783 GCCCGTGGCGCGGATGTTGTGGATGTTCAAGCCAATGCCGCCGGCCGTCTTGGAGATTTG 184842 Query 245311 GGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAG 245370 || |||| ||||| || || |||||||| || |||| |||||| | |||| Sbjct 184843 CGCACAGCACTTGAGCGTCTCGTAGATGCCCTCAATCGAGTCCTCCTTCATAGTCAGCAA 184902 Query 245371 AAAGCAGGAGGACAGCTG-GGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGT 245429 ||||| || |||| || |||| || | ||| | ||||||| || ||||| |||| Sbjct 184903 GAAGCACGACGACATTTGCGGGCGAGGCG-TGCCGGCATTGAACAACGTCGGGCTCGCGT 184961 Query 245430 GGGTAAAGTAGCGGCTCGAGAGGAACCCGTACGTCTGGAGCAGAGCG---TCGATGTTGT 245486 | || ||| | || ||| | || | |||||||| || |||| || |||| | Sbjct 184962 GCGTGAAGAATCGCTCCGACATGAGCTGGTACGTCT---CCAAAGCGGCATCAATGTCTT 185018 Query 245487 CGCCGTGGATCTGCAGGGCGCAC-CTCATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCC 245545 |||| ||||| | || ||| | ||||| ||||| || ||| | || Sbjct 185019 CGCCATGGATACCAACAGC-CACACGCATGATCAAATGCTGCGGACGCTC---CGCCACC 185074 Query 245546 TCG-----GGTCCCTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAGTACGAGT 245600 | | | | |||||||| || || ||||||||||||||||| ||||| || || Sbjct 185075 TTGCCATTGAT--CTTGAGCAAATATGAACGCTCGAGCGTCTTGAAACCAAAATAGTTGT 185132 Query 245601 AGCCAAAGTC 245610 |||||||||| Sbjct 185133 AGCCAAAGTC 185142 >seq33 Length=455653 Score = 230 bits (254), Expect = 4e-55 Identities = 363/516 (70%), Gaps = 12/516 (2%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692 |||||||||||| ||||| |||||||| || ||||||| ||| | || ||| Sbjct 391297 CCCTGCATCAAGCGCAAGGCCGACTGGGCATTCCGCTGGATCTCGAG---CAACAACACG 391241 Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 || | |||| | || || || ||| | || || |||||||| |||||||| || || || Sbjct 391240 TTTGCCGAGCGCCTTGTTGCTTTTGCGGCGGTTGAGGGCATTTTCTTCTCTGGTGCGTTT 391181 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAA 42812 || |||||||| ||||||||| || | | |||||| || | || ||||| ||||| Sbjct 391180 GCGTCCATCTTTTGGCTCAAGAAGCGCGGCTTGATGCCTGGCTTGACGTTCTCCAACGAG 391121 Query 42813 CTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCAC 42872 || || || | |||||||| |||| | ||||||||| || |||| ||| |||| Sbjct 391120 CTGATTTGCCGTGACGAGGGTTTGCACACGGACTTTGCGTG---CCTGCTCTTTGGCCAT 391064 Query 42873 CTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATC 42932 || | ||| ||| || || || || || || | |||||||| |||||||| |||| Sbjct 391063 CTGCGCAACACGCCTTCCAATGACCGTGTGCGCGATATCATCACCGAGGCCGTCAAGATT 391004 Query 42933 GAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTC 42992 ||| | || ||||| || | ||||||| || | || | ||||||||| | | ||| Sbjct 391003 GAGCAAGAATTCCTGACCGACGCGCTGCCTGTCGCGCTCATTGGCATGAACTCCAAGCTC 390944 Query 42993 ATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAG--C 43049 |||||| | ||||| | | || || |||| || || || | ||| ||| | Sbjct 390943 ATGTGCCAATACATTGAATTTGTTGCGGACCGCCTGCTCGTTGCTCTTGG---CCAGGAC 390887 Query 43050 CGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAG 43109 | |||||| | | ||||| ||||||||||| ||||||| | |||||||| Sbjct 390886 AAGCACTACAAGGCAACCAATCCCTTTGACTTTATGGACCTCATCTCGCTCCAGGGCAAG 390827 Query 43110 ACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||||| || || |||||||| ||| | ||||||||| Sbjct 390826 ACCAATTTCTTTGAGAAGCGTGTCTCTGACTACCAG 390791 >seq65 Length=159763 Score = 95.1 bits (104), Expect = 2e-14 Identities = 301/465 (65%), Gaps = 9/465 (2%) Strand=Plus/Plus Query 244129 GTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCT 244188 ||||| |||||| || ||||| | | ||| ||||||| || ||||| ||||| Sbjct 95001 GTAGATGTTGCTTGTGTATGGCTCAAAACACTCATTGTTGCCGAGGATCTGGCTTGTGCT 95060 Query 244189 CGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAG 244248 ||||| |||||||| | || || || || | ||| ||||| | || |||| Sbjct 95061 TGCAGTGGGCATGGGTGCGACGAGGAGCGAATTGCGCACACCGTGTTGCATGACGCGGGT 95120 Query 244249 TCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTC 244308 | ||| ||| ||| ||||| | || |||| | |||| |||||||||| Sbjct 95121 GCGGAGGGCGTCCCAATCCCAGC-GATCG-GAGGGC-------TTGACATCCCACATGTC 95171 Query 244309 AAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCG 244368 || || | | |||||||||| || ||| || || | |||||| ||| | Sbjct 95172 GAATTGGAAGACGCCCTTGCTGATTGGCGAGCCTTCAATGGACTCGTAGGGGCCGACCTC 95231 Query 244369 CTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTT 244428 ||| || | | ||| | | || | || ||| |||||||||||| ||||| ||| Sbjct 95232 CTGCGCAATGTCACACGACGCCTCCAACGCACCGTGGTAGATGGTCTCAAAGATGTCCTT 95291 Query 244429 GTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGC 244488 ||||| | || |||| | || || || | || | || || || | ||||| Sbjct 95292 GTTCAATTGACGCGCCTCGGGCGAGTCAAATGGCAGGCGAAGCAGCAAAAACGCATCGGC 95351 Query 244489 CAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGG 244548 ||| || |||||||| | || | ||| | || ||| ||||| || ||||| Sbjct 95352 CAGGCCTTGCACGCCAAGACCCACGGGACGATGGCGCATGTTGCTTCGGCGCGCTTCCTC 95411 Query 244549 CACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGT 244593 ||| || || ||| |||| ||||||||||| |||||||| || Sbjct 95412 CACAGGATAGTGGTTCACGTCAATCACCTTGTTCAGGTTGCGCGT 95456 Score = 93.3 bits (102), Expect = 8e-14 Identities = 237/357 (66%), Gaps = 8/357 (2%) Strand=Plus/Plus Query 244803 CCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGA 244862 ||||||| |||||| ||||| || ||||||| ||||| |||||| | | ||||| Sbjct 95851 CCTTGTACAGCATGTAGGGCATGCCAGTCTCGATTTGGGCATCGAGGATGGAGAACCAGA 95910 Query 244863 GGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGG 244922 | | || | |||| | ||| || |||||| |||||| |||||||||| Sbjct 95911 GCTTTTGGGCGTCGACCACGCGGCGGGCGCGGCCCTCACGCTCGTACTGGGTGTACAGCT 95970 Query 244923 CCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGAC 244982 |||||| ||| ||| | | | || ||||| ||| | ||||| | ||| Sbjct 95971 TCTCGAATTCGTCGCCATAAGCTTGATCGAGGCCCGGGGCCTCATTGGGGCAGAACAGAG 96030 Query 244983 TCCAC---TCGC-CGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCC 245038 |||| ||| |||| ||| || | || |||||| | ||| |||||| || | Sbjct 96031 ACCACGTTTCGTTCGCC-TCC---ACACGCTTCATGAACAAATCGCAGATCCACAGACCA 96086 Query 245039 TGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAG 245098 |||| ||||| | | | | || ||| ||| | |||||| | ||| ||||||||| Sbjct 96087 AGGAACAGGTCGCGCGCGCGCATTTCCTCCTTGCCCGAGTTCTTGCGCAGATCCAAAAAG 96146 Query 245099 TCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTG 245155 ||||| ||||| |||||||||||| | || | |||| | |||| |||||| Sbjct 96147 TCAAATACGTCCGTGTGCCAGGGCTCGAGATACATGGCGAAGCTGCCGTTGCGCTTG 96203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944337441168240