Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq30 98.7 8e-16 seq56 87.8 1e-12 seq45 82.4 6e-11 >seq30 Length=460931 Score = 98.7 bits (108), Expect = 8e-16 Identities = 155/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||||| ||| |||||| |||||| ||||||||||| || | | || Sbjct 195755 AGACGGAGCACCAAATGCAGCGTGGACTCCTTTTGAATGTTGTAGTCAGAGAGCGTGCGG 195814 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| ||||||||||||||||| || || ||||||||||| || || | || || Sbjct 195815 CCGTCTTCCAATTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGGGGAATGCCTTCC 195874 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACT---ATCAGTAGATTCGCATTCGACC 34086 ||||| ||| |||||||| | | | | | ||| | |||||| ||| | Sbjct 195875 TTGTCTTGAATCTTTTGCTTGAC---ATTGTCGATCGAATCGGACGATTCGACTTCCAAA 195931 Query 34087 GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || || || || || || || |||||||||||||| Sbjct 195932 GTGATGGTCTTGCCAGTGAGCGTCTTGACAAAGATTTGCAT 195972 >seq56 Length=224513 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/224 (68%), Gaps = 18/224 (8%) Strand=Plus/Plus Query 33913 CGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGCTCG 33972 ||||||||||| || | ||| |||||| || ||||||||||| | || || | Sbjct 32439 CGCAGCACCAGGTGCAACGTCGACTCCTTTTGGATGTTGTAATCCGACAGCGTGCGGCCA 32498 Query 33973 TCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCTTTG 34032 || |||||||||||||||||||| || || || |||||||| ||| | | ||| ||| Sbjct 32499 TCCTCCAATTGCTTGCCGGCAAAGATGAGTCGTTGCTGATCAGGCGGAATACCCTCCTTG 32558 Query 34033 TCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC---GCATTCGACC--- 34086 || || ||||||| ||||| ||||| | || || |||| ||| Sbjct 32559 TCTTGGATCTTTTGCT---------TCACATTATCAATTGAATCCGACGATTCAACCTCA 32609 Query 34087 ---GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || || || || || || || || ||||||||||| Sbjct 32610 AGTGTGATGGTCTTGCCAGTGAGCGTCTTGACGAAGATTTGCAT 32653 >seq45 Length=303593 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33937 TCCTTCTGAATGTTGTAATCTGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAAT 33996 |||||||| ||||||||||| | ||| || |||| |||||||||||||||||||| Sbjct 87302 TCCTTCTGGATGTTGTAATCAGACAAGGTGCGGCCGTCTTCCAATTGCTTGCCGGCAAAG 87243 Query 33997 ATCAGGCGCTGCTGATCCACCGGCACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 || ||||||||||| || || | || || ||||| || |||||||| Sbjct 87242 ATGAGGCGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCTTGGATCTTTTGCTT 87190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397061678959498