Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq45 136 9e-27 seq30 134 3e-26 seq56 111 4e-19 seq15 100 7e-16 >seq45 Length=303593 Score = 136 bits (150), Expect = 9e-27 Identities = 170/232 (73%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| |||||||| || | || || | || | |||| ||| ||||| || || |||| Sbjct 87114 CATG-CCACCGCGCAGGCGGAGAACCAAGTGGAGCGTGGATTCCTTTTGAATGTTGTAGT 87056 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | ||||||||| || || || ||||| || || ||||| |||| |||||| || | Sbjct 87055 CAGAGAGCGTGCGGCCATCCTCCAATTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCAG 86996 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| ||||| || || || |||||| || || || || || || ||| ||| | Sbjct 86995 GAGGGATGCCTTCCTTGTCTTGAATTTTCTGCTTGACATTGTCAATGGAGTCGGACGACT 86936 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || ||||| ||||| ||||| || || || ||||||||||| || ||||| Sbjct 86935 CCACCTCGAGTGTGATGGTCTTGCCAGTGAGCGTCTTGACGAAGATTTGCAT 86884 Score = 127 bits (140), Expect = 5e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | || | ||| || |||||||| || ||||| | Sbjct 86654 CCACCACGGAGACGCAGAACCAAGTGCAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAC 86595 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| ||||| || | || || || || || |||| |||||| ||| || ||| Sbjct 86594 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAAATCAAACGCTGCTGA---TCGGGG 86538 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || || ||||||||| || ||||| || ||||||||| ||| || Sbjct 86537 GGAATGCCCTCCTTGTCTTGGATTTTCTGCTTGACGTTGTCGATAGAATCGGACGACTCG 86478 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || || |||||||||||||| || ||||| Sbjct 86477 ACCTCCAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAAATTTGCAT 86428 Score = 125 bits (138), Expect = 2e-23 Identities = 170/233 (73%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| |||||||| || | || || | || | |||| ||| |||||||| || |||| Sbjct 86886 CATG-CCACCGCGCAGACGGAGGACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGT 86828 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | ||||||||| || || || | || || || ||||| || || ||||| || | Sbjct 86827 CAGAGAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAG 86768 Query 288362 CTGGGATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||||| ||||| || || ||||| ||| |||| || || || || |||||| ||| Sbjct 86767 GAGGGATGCCTTCCTTGTCTTGGATCTTTTGCTTG-ACATTGTCGATGGAATCGGACGAC 86709 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || | ||||| ||||| || || || ||||||||||| |||||||| Sbjct 86708 TCCACCTCCAAGGTGATGGTCTTGCCAGTGAGCGTCTTGACGAAAATCTGCAT 86656 >seq30 Length=460931 Score = 134 bits (148), Expect = 3e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||||||||| | || || | || | |||| ||| |||||||| || |||||| Sbjct 195515 TGGCCACCGCGGAGACGCAGGACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCG 195574 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | |||||||| || || || | || || || || ||||| || ||||| || Sbjct 195575 GACAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCGGGA 195634 Query 288364 GGGATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||||| ||||| || |||||||| ||| || || || || || || ||||| ||| || Sbjct 195635 GGGATACCTTCCTTGTCCTGGATCTTTTGC-TTGACATTGTCGATGGAATCCGACGACTC 195693 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| || |||| ||||||||| || |||||||| Sbjct 195694 GACCTCGAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 195744 Score = 116 bits (128), Expect = 9e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || || || | | ||||| || ||||| ||||| || || || || Sbjct 196009 TTCCTTTTGGATGTTGTAATCAGACAAGGTGCGGCCATCTTCCAATTGCTTGCCGGCAAA 196068 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGT 288400 ||| || ||||| || ||||| ||||| || |||||||| ||| |||| || | Sbjct 196069 GATGAGGCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTG-ACAT 196127 Query 288401 TTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGA 288460 | || || ||||| ||| || || ||||||||||| ||||| || |||| |||||| | Sbjct 196128 TATCAATGGAATCCGACGACTCGACCTCGAGCGTGATGGTCTTGCCAGTCAAAGTCTTAA 196187 Query 288461 CGAATATCTGCAT 288473 | || |||||||| Sbjct 196188 CAAAGATCTGCAT 196200 Score = 100 bits (110), Expect = 7e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | || | |||| || |||||||| || ||||| | Sbjct 196202 CCACCACGGAGACGGAGCACCAAGTGCAACGTGGACTCCTTTTGGATGTTGTAGTCAGAC 196261 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| || || || | || || || || ||||| || ||||| || || ||| Sbjct 196262 AGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGG---TCGGGG 196318 Query 288367 ---ATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 || || || || || || || ||| |||| || || || ||||| || ||| || Sbjct 196319 GGAATACCCTCCTTGTCTTGAATCTTTTGCTTG-ACATTGTCAATAGAGTCCGACGACTC 196377 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || || |||||||||||||| || ||||| Sbjct 196378 GACCTCCAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAAATTTGCAT 196428 >seq56 Length=224513 Score = 111 bits (122), Expect = 4e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| | || || || || || | ||| || |||||||| || || || | Sbjct 32427 CCGCCGCGCAATCGCAGCACCAGGTGCAACGTCGACTCCTTTTGGATGTTGTAATCCGAC 32486 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| || || || ||||| || || || ||||| || || || ||| | || Sbjct 32487 AGCGTGCGGCCATCCTCCAATTGCTTGCCGGCAAAGATGAGTCGTTGCTGATCAGGCGGA 32546 Query 288367 ATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || || || || || ||||| ||| |||| ||| || || || ||||| |||||| || Sbjct 32547 ATACCCTCCTTGTCTTGGATCTTTTGCTT-CACATTATCAATTGAATCCGACGATTCAAC 32605 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || || || ||||||||||| || ||||| Sbjct 32606 CTCAAGTGTGATGGTCTTGCCAGTGAGCGTCTTGACGAAGATTTGCAT 32653 >seq15 Length=628964 Score = 100 bits (110), Expect = 7e-16 Identities = 256/388 (66%), Gaps = 4/388 (1%) Strand=Plus/Plus Query 72412 TTTGCCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAA 72471 ||| ||| ||||| |||| || ||||| || || || || | || || | ||| | Sbjct 137533 TTTACCAGGCGTCCACGTCGGAATTGTACGGCAAGGTCGTCGAGACGCCCCAAAAGGAGA 137592 Query 72472 ATACTCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCT 72531 ||| || ||||||||||| || || |||||||| ||| |||| | | |||||| Sbjct 137593 CTACGCCCTTTTATCCTCGCTCGCCCTATGGTGTTGCCAAGCTGTATGGCTTCTGGATCG 137652 Query 72532 GTAAAAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACG 72591 |||||||| || || || |||||||| | ||||| || ||||| |||| Sbjct 137653 TCGTCAATTACCGCGAATCCTACAACATGTACGCGTGCAATGGCATCCTGTTCAACCACG 137712 Query 72592 AGAGTCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATA 72651 || |||| | | |||| || || || || || |||| | ||||| | | Sbjct 137713 AGTCTCCCCGCCGTGGCCGCACCTTTGTCACCCGCAAGATCAGCCGTGCTGTCGCCGACA 137772 Query 72652 TTTTCAATGGTGTCG--AAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTG 72709 | || | | |||| | ||||| ||||| | || || || || ||||| | ||||| Sbjct 137773 --TCCACTTGGGTCGCCAGGAATGCTTGTATTTGGGCAACATTGACGCCAAGCGCGATTG 137830 Query 72710 GGGATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGA 72769 ||| | || ||||| ||||| || | |||||| | ||||| || || || || || Sbjct 137831 GGGCCACGCCAAGGACTACGTCGAGGGCATGTGGCTCATGCTCCAGCAGGACGAGCCCGA 137890 Query 72770 TGACTATGTGATTGCAACAGGGAAAACA 72797 |||| ||| | || || || ||||| Sbjct 137891 AGACTTTGTTCTGGCCACGGGCGAAACA 137918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179652147966022