Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq33 129 1e-24 seq77 116 8e-21 seq84 107 4e-18 seq15 100 6e-16 >seq33 Length=455653 Score = 129 bits (142), Expect = 1e-24 Identities = 210/300 (70%), Gaps = 8/300 (3%) Strand=Plus/Minus Query 243502 ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCG- 243560 |||||||| || || || | | || | |||||| | |||||| | || || || Sbjct 391027 ATCATCACCGAGGCCGTCAAGATTGAGCAAGAATTCCTGACCGACGCGCTGCC-TGTCGC 390969 Query 243561 GCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 243620 ||| |||||||||||||| | |||||| | || ||||| ||||| || || |||||| | Sbjct 390968 GCTCATTGGCATGAACTCCAAGCTCATGTGCCAATACATTGAATTTGTTGCGGACCGCCT 390909 Query 243621 TTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGA 243680 || | || ||||| | || || ||||| | | || ||||||| ||||||||| Sbjct 390908 GCTCGTTGCTCTTGGCCAGGACAAGCACTACAAGGCAACCAATCCCTTTGACTTTATGGA 390849 Query 243681 GCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACG 243740 ||||| ||||| || || || || || ||||| || ||||||||| ||| || || || Sbjct 390848 CCTCATCTCGCTCCAGGGCAAGACCAATTTCTTTGAGAAGCGTGTCTCTGACTACCAGCG 390789 Query 243741 CCCTGGTGTGATGAA------ACCAGAGGATAACATTTTTGCGATTGATGATGATTTTTA 243794 |||| || ||||| || || || || ||| || |||||| ||| ||||| Sbjct 390788 TGCTGGCGTCATGAACAAGGCTCCTGAAGAAAAGGCCTTTACGCTTGATGCTGACTTTTA 390729 >seq77 Length=108250 Score = 116 bits (128), Expect = 8e-21 Identities = 414/641 (65%), Gaps = 16/641 (2%) Strand=Plus/Plus Query 332813 GATCACGACACCTCCACCAAAGTTCTTAAGTGCTTCGGCCATTGCTCCGAGACTCTCACG 332872 ||| ||||| || || ||| |||| | || ||| | || ||||| |||||| Sbjct 88105 GATGACGACGCCGCCGCCATAGTTGCGGATGGCGGTGGCGAGGGCGCCGAGGGACTCACG 88164 Query 332873 GTCAACGAAGTTGGTCGGTTCGTCCAAAACGATCACGTGGGGTTGTTGCCATAGAGCAGC 332932 || | | | ||||| ||||| || | |||| || ||| || | | ||| | || || Sbjct 88165 ATCGAGGTAATTGGTGGGTTCATCGAGGACGAGCATGTGCGGGCGATTCCACATGGCGGC 88224 Query 332933 GCCGATAACCAATTTCAGCTTTTGCCCGCCAGATAGACCACGAATGCGAGAATGAGTTGT 332992 ||| || || | || | |||||| ||||| || |||||||| ||||| || || || | Sbjct 88225 GCCAATGACGAGCTTGACCTTTTGGCCGCCGGAGAGACCACGGATGCGCGAGTGGGTGGC 88284 Query 332993 AAATTCAGGGTCGAGACCAACATTTGCCATATGTTCTTCCACGTTCTTTGCGGTCAGTGG 333052 ||||| | ||||| || || | | || ||| | ||| | | ||||||||| || Sbjct 88285 GAATTCGGCCTCGAGGCCGACCTCGGTCAGATGCTTTTCAATTTCGCGTGCGGTCAGGGG 88344 Query 333053 C---TTGAACATACCGTTTGCGACGGCTTCTTTGGTGTCAATGTCGTTCAGAAGTTTTCC 333109 |||| | | ||| |||| || || ||||| ||| | ||| | Sbjct 88345 GCGATTGAGGCC-CAGCTTGG--CGGCCTCCAAGGCGTCAACTTCGGCAATCTTTTTGGC 88401 Query 333110 GAAACCATACTCCTCGAGGCGTTCGCGAGATATCCA--TTGGGTAGTCTCATC----GTT 333163 ||| || | |||||| || || || ||||| | || | | || | Sbjct 88402 GAAGCCCATGTTCTCGAGTTTTTGACGCGAGATCCACGTATTGTCGACAGATGAGCGGCC 88461 Query 333164 TTTCCACTGAACCTCGTACTCGTAAGATTTTTTCAGCTTGCGGCGACCAAGAATCTTGTC 333223 |||| |||||||||||||| |||| || |||||||||||||| | | | ||| Sbjct 88462 AACCCACGACACCTCGTACTCGTACGATTGCTTGAGCTTGCGGCGACCCACCAATTCGTC 88521 Query 333224 AAGAATTTTCTTCACTCCGTCAACGACTTTAGTGTCATA--CATCTTCTTTAGTTCTTCT 333281 | | |||| | || |||| || | | | | | ||||| |||| |||||| Sbjct 88522 CACGACGCGCTTCTCGCCTTCAATGA--TGAATTCCTTGGTCATCTGCTTTTCTTCTTCC 88579 Query 333282 TCGTTGTTCTTCCTAGAAACGACGTCAAGGGTCTCTTTGTCTTCACCGGAGGCATAACGC 333341 || || | | | | || || || ||| ||| || || | ||||| ||| Sbjct 88580 TCAGTGATGATGCGATCCACCTTTTCCAGCTCCTCACGGTCCTCGCCTGTCGCATAGCGC 88639 Query 333342 CATTGGATATACTGGTTGGGTGTCATGTCAAGATGATCCTCGATGTGGTGGAAAGCATGC 333401 |||||||| |||| |||||| || |||| || || | || ||||| ||||| || ||| Sbjct 88640 CATTGGATGTACTCGTTGGGCGTGCTGTCCAGGTGCTTTTCAATGTGATGGAACGCGTGC 88699 Query 333402 TGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAAAC 333442 || |||||||| |||| |||| ||| ||||||||||| || Sbjct 88700 TGCGCCACGTACGCAATGCGCAAATTCGGATGCTTCCACAC 88740 >seq84 Length=91516 Score = 107 bits (118), Expect = 4e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 333321 TCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATCC 333380 |||||||||| |||||| ||||||||||| |||| |||||| || ||||| | || | | Sbjct 51167 TCTTCACCGGTGGCATAGCGCCATTGGATGTACTCGTTGGGGGTGATGTCCAAGTGCTTC 51226 Query 333381 TCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAA 333440 || || |||||||| || ||||| || || || |||| ||||| || || |||||||| Sbjct 51227 TCAATATGGTGGAAGGCGTGCTGGGCGACATAGGCAATACGCAAGTTGGGGTGCTTCCAG 51286 Query 333441 AC 333442 || Sbjct 51287 AC 51288 Score = 93.3 bits (102), Expect = 9e-14 Identities = 142/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 332814 ATCACGACACCTCCACCAAAGTTCTTAAGTGCTTCGGCCATTGCTCCGAGACTCTCACGG 332873 || |||||||| || ||| | | ||| | || | || | || ||||| ||| || Sbjct 50654 ATGACGACACCACCGCCATACTCCTTGATGGCACCAGCAAGGGCACCGAGGGACTCGCGA 50713 Query 332874 TCAACGAAGTTGGTCGGTTCGTCCAAAACGATCACGTG-GGGTTGTTGCCATAGAGCAGC 332932 || | | |||| || ||||||||||| || | || ||| || ||||| ||| | || || Sbjct 50714 TCCAAGTAGTTAGTAGGTTCGTCCAAGACCAACATGTGAGGCTTGTT-CCACATGGCGGC 50772 Query 332933 GCCGATAACCAATTTCAGCTTTTGCCCGCCAGATAGACCACGAATGCGAGAATGAGTTGT 332992 || || || | || | |||||| || || || |||||||| ||||| || ||||| | Sbjct 50773 ACCAATGACGAGCTTGACCTTTTGACCACCGGACAGACCACGGATGCGGGAGTGAGTGGC 50832 Query 332993 AAATTCAGGGTCGAGACCAA 333012 || || || |||||||||| Sbjct 50833 GAACTCGGGCTCGAGACCAA 50852 >seq15 Length=628964 Score = 100 bits (110), Expect = 6e-16 Identities = 256/388 (66%), Gaps = 4/388 (1%) Strand=Plus/Plus Query 68401 TTTGCCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAA 68460 ||| ||| ||||| |||| || ||||| || || || || | || || | ||| | Sbjct 137533 TTTACCAGGCGTCCACGTCGGAATTGTACGGCAAGGTCGTCGAGACGCCCCAAAAGGAGA 137592 Query 68461 ATACTCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCT 68520 ||| || ||||||||||| || || |||||||| ||| |||| | | |||||| Sbjct 137593 CTACGCCCTTTTATCCTCGCTCGCCCTATGGTGTTGCCAAGCTGTATGGCTTCTGGATCG 137652 Query 68521 GTAAAAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACG 68580 |||||||| || || || |||||||| | ||||| || ||||| |||| Sbjct 137653 TCGTCAATTACCGCGAATCCTACAACATGTACGCGTGCAATGGCATCCTGTTCAACCACG 137712 Query 68581 AGAGTCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATA 68640 || |||| | | |||| || || || || || |||| | ||||| | | Sbjct 137713 AGTCTCCCCGCCGTGGCCGCACCTTTGTCACCCGCAAGATCAGCCGTGCTGTCGCCGACA 137772 Query 68641 TTTTCAATGGTGTCG--AAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTG 68698 | || | | |||| | ||||| ||||| | || || || || ||||| | ||||| Sbjct 137773 --TCCACTTGGGTCGCCAGGAATGCTTGTATTTGGGCAACATTGACGCCAAGCGCGATTG 137830 Query 68699 GGGATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGA 68758 ||| | || ||||| ||||| || | |||||| | ||||| || || || || || Sbjct 137831 GGGCCACGCCAAGGACTACGTCGAGGGCATGTGGCTCATGCTCCAGCAGGACGAGCCCGA 137890 Query 68759 TGACTATGTGATTGCAACAGGGAAAACA 68786 |||| ||| | || || || ||||| Sbjct 137891 AGACTTTGTTCTGGCCACGGGCGAAACA 137918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102877894533150