Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq61 181 1e-40 seq5 116 4e-21 seq15 109 7e-19 seq65 95.1 1e-14 seq30 86.0 7e-12 >seq61 Length=186913 Score = 181 bits (200), Expect = 1e-40 Identities = 859/1351 (64%), Gaps = 34/1351 (3%) Strand=Plus/Plus Query 113954 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATG 114013 ||||| ||||| |||||||||||| || | ||||| | |||||||| ||||||||| Sbjct 183698 GTGTAGGGCTCGAAGCACTCATTGAAGCCGAGCATTTGCGACGTGGAGGCGGTGGGCATG 183757 Query 114014 GGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCC 114073 || || | || | ||| |||| ||| | | | ||| |||||| | | || Sbjct 183758 GGGGCGACAAGCAATGAGTTGCGGACACCGTGCTGGGCGACCTGTTGCTTGAGAGTGGCC 183817 Query 114074 CAGTCGTA--GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGG 114131 || || | | | || | | | | | ||||||||| |||||| ||| || | || Sbjct 183818 CAATCCCAAAGATCAG--TGGGGGTCACGTTCCACATATCGTACTGGAAGATGCCCTTGG 183875 Query 114132 AGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCG 114191 | | || || ||| | |||||||| ||||| | || ||||||||| | | Sbjct 183876 ACACGGGGCTGCCTTCATAGGTCTCGTAGGGGCCTTGGACGCGCGCCAATTCCATGGATG 183935 Query 114192 CCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGT 114251 ||| | ||| ||||| || || || ||||| || || || | |||||| || | Sbjct 183936 TCTCCATGGCGGCGTGGTAAATGGTTTCAAAGATTTGAATGTTGAGCATCTTGGCTTCCT 183995 Query 114252 CGGAATCAAACGCGAGTCGGCACAAA-ATAAATACATCCGCGAGACCTTGGACACCGAGG 114310 | || || || | || ||| | || || || || || || |||| || | | Sbjct 183996 CCGAGTCGAATG-GATAGCGCATGAGCATGAAGGTGTCAGCCAGGCCCTGGATGCCCAAG 184054 Query 114311 CCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCA---CGGGATAAAAATTC 114367 ||||| ||||| || | | || || ||| ||| ||| | |||| ||| |||| Sbjct 184055 CCAATGGGGCGGTGGCGAAGGTTGGA---TCGCTCGGCCTCAATGACGGGGTAATAATTG 184111 Query 114368 CTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCG 114427 |||||| | | | || | ||| |||| ||||| | | || | || | | Sbjct 184112 ACATCGATGATCTTGTTCAAATTGCGCGTGATCACCTTGACAACCTGGTGCAATTTCTTG 184171 Query 114428 TAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGG----GCGATTGACGCCAG 114483 ||||||| |||| ||||| || || || || || || |||| Sbjct 184172 AAATCAAAC------GTCTTGCGGTTGACG-ACGTATGATGGCAACGCAATGCTGGCCAA 184224 Query 114484 ATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGA 114543 || ||||| | ||||||| | ||| || | ||| ||||| |||||||| Sbjct 184225 GTTGCACACGGCAATCTCATCGGGGCTCGAGTATTCGACAATCTCCGTGCACAAATTGCT 184284 Query 114544 ACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAG 114603 | || |||||||| | ||||| || || || || ||| ||||| |||||||| | Sbjct 184285 GCATTTGATGGTGCCGAGGTTCTGCTGGTTGGATTTGCGGTTGCACGCGTCCTTGTACAA 184344 Query 114604 CATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCGG 114662 ||| | || | |||||||| || |||| || |||||| || | ||| | | | ||| Sbjct 184345 GATGAACGGATTGCCCGTCTCGGTCTGGGCCTCGAGAATCGCGTACCACAACTTTTGCGC 184404 Query 114663 CTGGCACAG-TGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAAC 114721 || | | ||||| || || ||||||| ||||||||| | | ||| || || Sbjct 184405 CTTGATCGTCTGGCGC--GCACGGCCCTCCTTTTCGTACTTTTCAAACAAGGCCTCGAAT 184462 Query 114722 TCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGA 114781 || || ||| |||| | || |||| | ||||| ||||| ||||| | Sbjct 184463 TCATCGCCCCACACCTCGTGCAAATTGGGCGCCTCGTTGGGGCAAAAGAGCGACCAGTCG 184522 Query 114782 CCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCC 114841 ||| |||| |||||||||||||| | || || | |||||| || | || | ||| Sbjct 184523 CCATTGGCCTCGACACGCTTCATGAACAAATCAGGCACCCAGAGCGCGTAAAACAAATCG 184582 Query 114842 CGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCC 114901 || ||| || || | ||| || ||||| ||||||||| | || || Sbjct 184583 CGCGCGCGGATCTCGTCCTTGCCCACGTTCTTGCGCAATTCCAAAAAGGTGAAAATGTCG 184642 Query 114902 GCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTT 114958 |||||||| || || ||||||| || | | ||| || || | |||| Sbjct 184643 GCGTGCCAAGGCTCGAGGTACATGGCAAACGCACCCGGGCGCTTGTTCCCTCCTTGGTCA 184702 Query 114959 ACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCA 115018 || || | ||| ||| || || ||||| ||||| || | | ||||| | |||| Sbjct 184703 ACGTAGCGCGCCGTGTTGTTGAACACGCGCAGCATAGGCAACAGACCATTGGCCGTGCCA 184762 Query 115019 TTTGTCCCCCGAA--TACGAGACTTATTGGCTCTGACATCATGGATGTGCATACCAATAC 115076 || || || || |||||| | |||| | || | ||||||| || ||||| | Sbjct 184763 TTGGTGCCGGCAATGTACGAGCC--CGTGGCGCGGATGTTGTGGATGTTCAAGCCAATGC 184820 Query 115077 CCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCG 115136 | || ||| ||| ||||||||||| || | |||| | ||||||| || || |||| Sbjct 184821 CGCCGGCCGTCTTGGAGATTTGCGCACAGCACTTGAGCGTCTCGTAGATGCCCTCAATCG 184880 Query 115137 AGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGT 115196 |||| |||| | | | | |||||| ||||||||| || | || || || || | Sbjct 184881 AGTCCTCCTTCATAGTCAGCAAGAAGCACGACGACATTTGCGGGCGAGGCGTGCCGGCAT 184940 Query 115197 TGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAGGTCTCCA 115256 |||| | || || ||||||| |||| | | | ||||| | ||| ||||||| Sbjct 184941 TGAACAACGTCGGGCTCGCGTGCGTGAAGAATCGCTCCGACATGAGCTGGTACGTCTCCA 185000 Query 115257 AGACGGCGGGAATGTCTTCCCCGTGAATACC 115287 | |||| ||||||||| || || ||||| Sbjct 185001 AAGCGGCATCAATGTCTTCGCCATGGATACC 185031 >seq5 Length=887111 Score = 116 bits (128), Expect = 4e-21 Identities = 260/388 (67%), Gaps = 2/388 (1%) Strand=Plus/Plus Query 8526 TATCAAGCATCTTCCTCGGAGATGTTTGGTAAAGTTAGGGAATCCCCTCAAAATGAGGAG 8585 || ||||| || |||| ||| ||| ||| || ||| || | || ||||| ||| Sbjct 16389 TACCAAGCCTCCACCTCTGAGCTGTATGGCAAGGTTGTCGAGACTCCCCAAAAGGAGACC 16448 Query 8586 ACACCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGT-TGCGGCACATTGGCTCGT 8644 || |||||||| || || || |||||| || | ||| | | ||| | ||| |||| Sbjct 16449 ACGCCCTTCTACCCTCGCTCGCCCTATGGTGTTGCCAAGCTGTATGGCT-ACTGGATCGT 16507 Query 8645 GAAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTCAACCACGA 8704 || ||||| || ||||| | | |||||| || || || || |||||||| Sbjct 16508 CGTCAACTACCGCGAGTCCTACAACATGTACGCGTGCAATGGCATCCTGTTTAACCACGA 16567 Query 8705 GTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAACAAAT 8764 ||| ||||| ||||||| || || || ||||||| | || | || | || Sbjct 16568 GTCTCCCCGCCGTGGCCGCACCTTTGTCACCCGCAAGATCAGCCGTGCTGTCGCCGACAT 16627 Query 8765 CGTCGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGG 8824 | | |||| ||| | | | | ||||| ||| | ||||| || | || ||||| Sbjct 16628 CCACTTGGGTCGCCAGGAATGCTTGTATTTGGGCAACATTGACGCCAAGCGCGATTGGGG 16687 Query 8825 ACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGACGA 8884 |||||||||||||| || || | |||||||||| | || || || || ||| | || || Sbjct 16688 CCACGCCAAGGACTACGTCGAGGGCATGTGGCTCATGCTCCAGCAGGACGAGCCCGAAGA 16747 Query 8885 ATATGTCGTCGCGACGGGGGAGACACAC 8912 | |||| | || ||||| ||||| ||| Sbjct 16748 CTTTGTCCTTGCCACGGGCGAGACCCAC 16775 >seq15 Length=628964 Score = 109 bits (120), Expect = 7e-19 Identities = 235/349 (67%), Gaps = 2/349 (1%) Strand=Plus/Plus Query 8571 CCTCAAAATGAGGAGACACCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGT-TGC 8629 || ||||| ||| || ||||| ||||| || || |||||| || | ||| | | Sbjct 137580 CCCCAAAAGGAGACTACGCCCTTTTATCCTCGCTCGCCCTATGGTGTTGCCAAGCTGTAT 137639 Query 8630 GGCACATTGGCTCGTGAAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTAT 8689 ||| | || |||| |||||||| |||||||| | | |||||| || || Sbjct 137640 GGCTTCT-GGATCGTCGTCAATTACCGCGAATCCTACAACATGTACGCGTGCAATGGCAT 137698 Query 8690 TCTCTTCAACCACGAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGA 8749 || |||||||||||||| ||||| ||||||| || || || ||||||| | Sbjct 137699 CCTGTTCAACCACGAGTCTCCCCGCCGTGGCCGCACCTTTGTCACCCGCAAGATCAGCCG 137758 Query 8750 TGGTATCAAACAAATCGTCGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGC 8809 || | || | ||| | |||| ||| | | | | ||||| ||| | |||| Sbjct 137759 TGCTGTCGCCGACATCCACTTGGGTCGCCAGGAATGCTTGTATTTGGGCAACATTGACGC 137818 Query 8810 CGAGAGGGACTGGGGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACA 8869 | || | || ||||| |||||||||||||| || || | |||||||||| | || || || Sbjct 137819 CAAGCGCGATTGGGGCCACGCCAAGGACTACGTCGAGGGCATGTGGCTCATGCTCCAGCA 137878 Query 8870 AGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTC 8918 || ||| | || || | ||| | || ||||| || |||||| | ||| Sbjct 137879 GGACGAGCCCGAAGACTTTGTTCTGGCCACGGGCGAAACACACACTGTC 137927 >seq65 Length=159763 Score = 95.1 bits (104), Expect = 1e-14 Identities = 279/423 (66%), Gaps = 8/423 (2%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | |||||||||||||| ||||||||||| || | ||| ||| ||| Sbjct 95002 TAGATGTTGCTTGTGTATGGCTCAAAACACTCATTGTTGCCGAGGATCTGGCTTGTGCTT 95061 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 114061 || |||||||||||||| | ||| || || || | ||| | || | | | ||| Sbjct 95062 GCAGTGGGCATGGGTGCGACGAGGAGCGAATTGCGCACACCGTGTTGCATGACGCGGGTG 95121 Query 114062 TTGAGGGCGTCCCAGTCGTAGTTGAGC-TTTGTCTCCCCCTGCCACATATCAAACTGGAG 114120 |||||||||||| || || || | | || | | |||||| || || |||| Sbjct 95122 CGGAGGGCGTCCCAATCCCAG-CGATCGGAGGGCTTGACATCCCACATGTCGAATTGGAA 95180 Query 114121 GATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAA 114180 || || | | | |||||| || |||| | |||||| ||||| | ||| ||| | Sbjct 95181 GACGCCCTTGCTGATTGGCGAGCCTTCAATGGACTCGTAGGGGCCGACCTCCTGCGCAAT 95240 Query 114181 TTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTC-ATTG 114239 || | |||||| | || |||| || || |||||||| ||| ||| |||| Sbjct 95241 GTCACACGACGCCTCCAACGCACCGTGGTAGATGGTCTCAAAGATGTCCTTGTTCAATTG 95300 Query 114240 CCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTT 114299 | |||||| || ||||| | || || || | ||| |||| || || |||| Sbjct 95301 AC-GCGCCTCGGGCGAGTCAAATGGCAGGCGAAGCAGCAAAAACGCATCGGCCAGGCCTT 95359 Query 114300 GGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGT--CTCCACGGG 114357 | || || || || | || ||||| | ||| || ||| | ||| | |||||| || Sbjct 95360 GCACGCCAAGACCCACGGGACGATGGCGCATGTT--GCTTCGGCGCGCTTCCTCCACAGG 95417 Query 114358 ATA 114360 ||| Sbjct 95418 ATA 95420 Score = 84.2 bits (92), Expect = 3e-11 Identities = 284/439 (65%), Gaps = 9/439 (2%) Strand=Plus/Plus Query 114594 CCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA 114653 ||||||| |||||||| ||| | || ||||| |||||| | ||| || | ||||| Sbjct 95851 CCTTGTACAGCATGTAGGGCATGCCAGTCTCGATTTGGGCATCGAGGATGGAGAACCAGA 95910 Query 114654 CATC---GGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGA 114710 | |||| | ||| | |||| ||| || ||||| |||||||| ||||| | Sbjct 95911 GCTTTTGGGCGTCGACCAC-GCGGCG--GGCGCGGCCCTCACGCTCGTACTGGGTGTACA 95967 Query 114711 GGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGA 114770 | || || || || || || | ||| || || |||| || |||||||| | Sbjct 95968 GCTTCTCGAATTCGTCGCCATAAGCTTGATCGAGGCCCGGGGCCTCATTGGGGCAGAACA 96027 Query 114771 GAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTG 114830 ||||||| | | |||| |||||||||||||| | || |||||| ||| | Sbjct 96028 GAGACCACGTTTCGTTCGCCTCCACACGCTTCATGAACAAATCGCAGATCCACAGACCAA 96087 Query 114831 AGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGT 114890 ||| || || || ||| ||| || | ||| || |||| |||||||||| Sbjct 96088 GGAACAGGTCGCGCGCGCGCATTTCCTCCTTGCCCGAGTTCTTGCGCAGATCCAAAAAGT 96147 Query 114891 CCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGAC 114947 | | | |||| |||||| || || || |||| |||| || || || | || Sbjct 96148 CAAATACGTCCGTGTGCCAGGGCTCGAGATACATGGCGAAGCTGCCGTTGCGCTTGCCAC 96207 Query 114948 CAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCAT 115007 || | || | ||| | | ||| || |||| | ||||| | ||| || | || |||| Sbjct 96208 CACCTTGCGTCACAAAGCGCGCCGTATCATTGTACACGCGCAACATGGGCACAATGCCAT 96267 Query 115008 CAGATTGGCCATTTGTCCC 115026 || |||||||||||| Sbjct 96268 TGGACGTGCCATTTGTCCC 96286 >seq30 Length=460931 Score = 86.0 bits (94), Expect = 7e-12 Identities = 215/321 (67%), Gaps = 7/321 (2%) Strand=Plus/Minus Query 10875 CAAAGCCATCCATCTCAGTCAAG-AGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCG 10933 ||||||| |||||||| | | || || || |||| ||| |||||||||||| || || Sbjct 126273 CAAAGCCGTCCATCTC-GACGAGCAGCTGGTTGAGGGTGCTTTCGCGTTCATCGTTGCCG 126215 Query 10934 GGCAT---ACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACG 10990 ||| ||||||| | || ||| || | |||||| ||||| |||| || | | Sbjct 126214 CCCATCTGACCACCCTTGCCACGGGCCTTGCCAATGGCGTCGATTTCGTCGACAAAGATG 126155 Query 10991 ATACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACA 11050 ||||| || ||||| |||| | || | ||| ||||| | | || ||||||| Sbjct 126154 ATACAGGGAGCATTTTTCTTGGCATTGGCGAACAAATCGCGGACACGCGAGGGACCGACA 126095 Query 11051 CCCACAAACATTTCCACAAAATTGGCGGCGGA-ACATTGGATGAAGGGGACGTTGGATTC 11109 || |||||||| || ||||| | || | || || | || |||||| || || || Sbjct 126094 CCGACAAACATCTCGACAAACTCGGAACCTGACACGCT-GAAGAAGGGCACACCGGCCTC 126036 Query 11110 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGC 11169 ||| ||| | || ||| | || ||||| || || || || || | || | ||| Sbjct 126035 ACCGGCGGTCGCCTTGGCCAACAGAGTCTTACCGGTACCTGGAGGACCGGAAAGGATGGC 125976 Query 11170 ACCACGTGGGATCCTGGCACC 11190 ||| || || || |||| || Sbjct 125975 ACCGCGAGGAATGGTGGCGCC 125955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597352487428920