Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq30 141 1e-28 seq45 120 3e-22 seq56 109 6e-19 >seq30 Length=460931 Score = 141 bits (156), Expect = 1e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||||||||||| ||| |||||||||||| ||||| |||| || || || | Sbjct 195757 ACGGAGCACCAAATGCAGCGTGGACTCCTTTTGAATGTTGTAGTCAGAGAGCGTGCGGCC 195816 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || | ||||| || ||||| ||||| ||||||||||| | || | || ||||| Sbjct 195817 GTCTTCCAATTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTT 195876 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 ||| || ||||| |||| | | | || ||| |||||| || || | ||||| Sbjct 195877 GTCTTGAATCTTTTGCTTGACATTGTCGATCGAATCGGACGATTCGACTTCCAAAGTGAT 195936 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| ||||| || |||||||| |||||||||||||| Sbjct 195937 GGTCTTGCCAGTGAGCGTCTTGACAAAGATTTGCAT 195972 Score = 120 bits (132), Expect = 3e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| ||||| ||| ||||||||| || ||||| |||| ||| || || | Sbjct 196213 ACGGAGCACCAAGTGCAACGTGGACTCCTTTTGGATGTTGTAGTCAGACAGCGTGCGGCC 196272 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| || || || || || ||||||||||||| || | | |||||| Sbjct 196273 ATCCTCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCGGGGGGAATACCCTCCTT 196332 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 ||| || ||||| |||| | | | | ||| ||| || || || | ||||| Sbjct 196333 GTCTTGAATCTTTTGCTTGACATTGTCAATAGAGTCCGACGACTCGACCTCCAGAGTGAT 196392 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 ||| ||||| || || ||||| || || |||||||| || Sbjct 196393 GGTCTTGCCAGTGAGAGTCTTGACGAAAATTTGCATGTT 196431 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 |||||||| || |||||||||| || || || | || || | ||||| || || || Sbjct 196010 TCCTTTTGGATGTTGTAATCAGACAAGGTGCGGCCATCTTCCAATTGCTTGCCGGCAAAG 196069 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| ||||||||||||| || | || ||||||||| ||| ||||| |||| | Sbjct 196070 ATGAGGCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTGACATTA 196129 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | | || ||| || || |||| ||||||||| ||||| || | ||||| ||| Sbjct 196130 TCAATGGAATCCGACGACTCGACCTCGAGCGTGATGGTCTTGCCAGTCAAAGTCTTAACA 196189 Query 42198 AAGATTTGCAT 42208 ||||| ||||| Sbjct 196190 AAGATCTGCAT 196200 Score = 107 bits (118), Expect = 2e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 41975 TTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTA 42034 |||| | || || | | ||||| ||||| || | ||| |||||||| || ||||| Sbjct 195511 TTATTGGCCACCGCGGAGACGCAGGACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTA 195570 Query 42035 ATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094 || | ||| || || | || || |||||||| || || || || || ||||||||||| Sbjct 195571 GTCGGACAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTC 195630 Query 42095 GGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA 42154 || || | | ||||||||| ||| ||||| |||| | | | | || ||| Sbjct 195631 GGGAGGGATACCTTCCTTGTCCTGGATCTTTTGCTTGACATTGTCGATGGAATCCGACGA 195690 Query 42155 TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || |||| |||||||| ||||| || | ||||| |||||||| ||||| Sbjct 195691 CTCGACCTCGAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 195744 >seq45 Length=303593 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| ||||| ||| ||||| || || |||||||||| || || || |||| || Sbjct 87320 ACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAATCAGACAAGGTGCGGCCGTCTTCC 87261 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 | ||||| || || || ||||| ||||||||||||| || | || |||||||| | Sbjct 87260 AATTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCTTGG 87201 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || ||||| |||| | | | | |||| |||||| || || | |||||||| ||| Sbjct 87200 ATCTTTTGCTTGACATTGTCGATGGAGTCGGACGATTCGACCTCCAAAGTGATGGTCTTG 87141 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | ||||| |||||||| ||||| Sbjct 87140 CCGGTCAAGGTCTTGACAAAGATCTGCAT 87112 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| || | ||| |||||||| || ||||| |||| || || || | || || Sbjct 86864 ACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGCGTGCGGCCATCCTCG 86805 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| || ||||| ||||| ||||||||||| | || | || |||||||| | Sbjct 86804 AGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGG 86745 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || ||||| |||| | | | | ||| ||| ||||| || | |||||||| ||| Sbjct 86744 ATCTTTTGCTTGACATTGTCGATGGAATCGGACGACTCCACCTCCAAGGTGATGGTCTTG 86685 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || |||||||| || || || ||||| Sbjct 86684 CCAGTGAGCGTCTTGACGAAAATCTGCAT 86656 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| || | ||| ||||||||||| ||||| |||| || || || | || || Sbjct 87092 ACCAAGTGGAGCGTGGATTCCTTTTGAATGTTGTAGTCAGAGAGCGTGCGGCCATCCTCC 87033 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 | ||||| || ||||| || | ||||||||||| | || | || |||||||| Sbjct 87032 AATTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGA 86973 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 ||||| || |||| | | | | |||| ||| ||||| |||| |||||||| ||| Sbjct 86972 ATTTTCTGCTTGACATTGTCAATGGAGTCGGACGACTCCACCTCGAGTGTGATGGTCTTG 86913 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || |||||||| || ||||||||||| Sbjct 86912 CCAGTGAGCGTCTTGACGAAGATTTGCAT 86884 >seq56 Length=224513 Score = 109 bits (120), Expect = 6e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 41991 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 42050 || |||| ||||| ||||| || ||||||||| || |||||||| | ||| || || Sbjct 32436 AATCGCAGCACCAGGTGCAACGTCGACTCCTTTTGGATGTTGTAATCCGACAGCGTGCGG 32495 Query 42051 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCC 42110 | || || | ||||| || || || |||||||| ||||| || | || | | |||| Sbjct 32496 CCATCCTCCAATTGCTTGCCGGCAAAGATGAGTCGTTGCTGATCAGGCGGAATACCCTCC 32555 Query 42111 TTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTG 42170 ||||| ||| ||||| || | | | | | || |||||| || || | ||| Sbjct 32556 TTGTCTTGGATCTTTTGCTTCACATTATCAATTGAATCCGACGATTCAACCTCAAGTGTG 32615 Query 42171 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| ||||| || |||||||| || ||||||||||| Sbjct 32616 ATGGTCTTGCCAGTGAGCGTCTTGACGAAGATTTGCAT 32653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543211788266160