Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq61 152 5e-32 seq30 140 3e-28 seq56 138 1e-27 seq45 134 1e-26 seq1 96.9 3e-15 seq94 87.8 2e-12 >seq61 Length=186913 Score = 152 bits (168), Expect = 5e-32 Identities = 568/877 (65%), Gaps = 25/877 (3%) Strand=Plus/Plus Query 154590 GCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCACAAA 154649 ||||||||||| |||||||| || || | || ||||| ||||| || | ||||||| Sbjct 184220 GCCAAGTTGCACACGGCAATCTCATCGGGGCTCGAGTATTCGACAATCTCCGTGCACAAA 184279 Query 154650 TTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCTTTG 154709 || |||||| |||||||| ||||| | ||| || |||||| |||||| ||||| ||| Sbjct 184280 TTGCTGCATTTGATGGTGCCGAGGTTCTGCTGGTTGGATTTGCGGTTGCACGCGTCCTTG 184339 Query 154710 TACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTGTGCGAAACAGACTT 154769 ||||| ||| |||| ||||||| || |||| || | ||| | | ||| || Sbjct 184340 TACAAGATGAACGGATTGCCCGTCTCGGTCTGGGCCTCGAGAATCGCGTACCACAACTTT 184399 Query 154770 CGCGCCTCAACT---TGACAAGTAAATCGATTTTCGCTCTCATATTGTTCGTACAGTTTT 154826 |||||| | || | | | || || | || || | ||| ||| Sbjct 184400 TGCGCCTTGATCGTCTGGCGCGCA---CGGCCCTCCTTTTCGTACTTTTCAAACAAGGCC 184456 Query 154827 TCAAACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGTCGGGACACATCAATGAC 154886 || || || | |||| || |||| ||| || ||| || | | ||| Sbjct 184457 TCGAATTCATCGCCCCACACCTCGTGCAAATTGGGCGCCTCGTTGGGGCAAAAGAGCGAC 184516 Query 154887 CACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGTACAAC 154946 || | || | || || ||||| |||||||| |||||||| | ||||| ||| Sbjct 184517 CAGTCGCCATTGGCCTCGACACGCTTCATGAACAAATCAGGCACCCAGAGCGCGTAAAAC 184576 Query 154947 AAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTT-TCGCTTTAAATTCAAAAAA--TCA 155003 ||||| ||||| | || || ||||| ||| | || ||||| ||||| | | Sbjct 184577 AAATCGCGCGCGCGGATCTCGTCCTTGCCCACGTTCTTGCGC--AATTCCAAAAAGGTGA 184634 Query 155004 TATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTTTGCGTTTT---CCT 155060 | |||||||||||||| ||||| | || | ||| | ||| || ||| || ||| Sbjct 184635 AA-ATGTCGGCGTGCCAAGGCTCGAGGTACATGGCAAACGCACCCGGGCGCTTGTTCCCT 184693 Query 155061 CCTTGATCCACGTGACGCACACAATTATTGTACACGCGCAACAATGGTTCCACGCCGCTG 155120 ||||| || |||| ||| | || ||| ||||||||| || || || || || Sbjct 184694 CCTTGGTCAACGTAGCGCGCCGTGTTGTTGAACACGCGCAGCATAGGCAACAGACCATTG 184753 Query 155121 GCCGTGCCGTTGGTGCC----ACGTATCGCGCTGCCGCGAGCACGCGCTTTATGAACATT 155176 |||||||| |||||||| | ||| || || ||| | || || || || | || Sbjct 184754 GCCGTGCCATTGGTGCCGGCAATGTA-CGAGC--CCGTG-GCGCGGATGTTGTGGATGTT 184809 Query 155177 AACGCCCAAACCTCCG-CCGTATTTAGATATTTGCGCACAGTCCGCCAAAGTTTCGTACA 155235 | ||| | || ||| |||| || || |||||||||||| | | || ||||| | Sbjct 184810 CAAGCCAATGCCGCCGGCCGTCTTG-GAGATTTGCGCACAGCACTTGAGCGTCTCGTAGA 184868 Query 155236 TTCCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAACACGAAGATAATTGAGGTTGAG 155295 | || | || ||| || |||| |||| |||||| ||||| || | ||| || ||| Sbjct 184869 TGCCCTCAATCGAGTCCTCCTTCATAGTCAGCAAGAAGCACGACGACATTTGCGGGCGAG 184928 Query 155296 GGCAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAACATTTTGTTGGCGGTTAAGT 155355 | |||||| || || || || || ||||| || || | | | | | | | Sbjct 184929 GCGTGCCGGCATTGAACAACGTCGGGCTCGCGTGCGTGAAGAATCGCTCCGACATGAGCT 184988 Query 155356 TGTAAGTTTCGATGGCGGCGTCAATGTCACGACCGTGTATACCGATCGCCACGCGCATCA 155415 ||| || || | ||||| |||||||| || || ||||| | ||||| ||||| | Sbjct 184989 GGTACGTCTCCAAAGCGGCATCAATGTCTTCGCCATGGATACCAACAGCCACACGCATGA 185048 Query 155416 GCATGTGTTGAATGCGCTCCGCAACGCGGCCGTTGAT 155452 || || || |||||||| || ||| ||||| Sbjct 185049 TCAAATGCTGCGGACGCTCCGCCACCTTGCCATTGAT 185085 >seq30 Length=460931 Score = 140 bits (154), Expect = 3e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | ||| | ||| || || |||||||||||||| || | || ||||| ||||| Sbjct 195761 AGCACCAAATGCAGCGTGGACTCCTTTTGAATGTTGTAGTCAGAGAGCGTGCGGCCGTCT 195820 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||||||||||| ||||||| ||||||||||| || ||||| ||||| || ||| Sbjct 195821 TCCAATTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCT 195880 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || |||||||| ||| || | | ||| | || ||||| | ||| | |||| Sbjct 195881 TGAATCTTTTGCTTGACATTGTCGATCGAATCGGACGATTCGACTTCCAAAGTGATGGTC 195940 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || | || || || || |||||||| Sbjct 195941 TTGCCAGTGAGCGTCTTGACAAAGATTTGCAT 195972 Score = 132 bits (146), Expect = 5e-26 Identities = 150/199 (75%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| ||||| ||||||||||| | | |||||| | ||||| | ||||||||| Sbjct 196004 GTAGATTCCTTTTGGATGTTGTAATCAGACAAGGTGCGGCCATCTTCCAATTGCTTGCCG 196063 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||| ||||||||||||||||| || ||||| || || || || |||||||| Sbjct 196064 GCAAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTG 196123 Query 64367 ACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACGGTCTTGCCGGTCAAAG 64424 ||| || | | || ||| || || || || | || | ||||||||| ||||||| Sbjct 196124 ACATTATCAATGGAAT--CCGACGACTCGACCTCGAGCGTGATGGTCTTGCCAGTCAAAG 196181 Query 64425 TTTTTACGAAAATTTGCAT 64443 | || || || || ||||| Sbjct 196182 TCTTAACAAAGATCTGCAT 196200 Score = 129 bits (142), Expect = 6e-25 Identities = 160/217 (74%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | || | ||| || || ||||| |||||||| || | | ||||| | || Sbjct 196217 AGCACCAAGTGCAACGTGGACTCCTTTTGGATGTTGTAGTCAGACAGCGTGCGGCCATCC 196276 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||||||| | || || |||||||||||||| ||||| || || || ||| Sbjct 196277 TCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCT 196336 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACGG 64409 || || |||||||| ||| || | | | ||| || || || || | ||| | || Sbjct 196337 TGAATCTTTTGCTTGACATTGTCAATAGAGT--CCGACGACTCGACCTCCAGAGTGATGG 196394 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||||| || | ||| || |||||||||||||| || Sbjct 196395 TCTTGCCAGTGAGAGTCTTGACGAAAATTTGCATGTT 196431 Score = 125 bits (138), Expect = 7e-24 Identities = 149/200 (75%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 64246 CGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCC 64305 ||| ||||| ||||| |||||||| || | | ||||| | || || ||||||||||| Sbjct 195547 CGTGGATTCCTTTTGGATGTTGTAGTCGGACAGCGTGCGGCCATCCTCGAGCTGCTTGCC 195606 Query 64306 GGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTT 64365 |||| | || || ||||||||||||||||| || ||||| || || || || |||||||| Sbjct 195607 GGCAAAGATAAGGCGCTGCTGGTCGGGAGGGATACCTTCCTTGTCCTGGATCTTTTGCTT 195666 Query 64366 TACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 ||| || | | || ||| || || || || | || | ||||||||| |||||| Sbjct 195667 GACATTGTCGATGGAAT--CCGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGTCAAA 195724 Query 64424 GTTTTTACGAAAATTTGCAT 64443 || || || || || ||||| Sbjct 195725 GTCTTGACAAAGATCTGCAT 195744 >seq56 Length=224513 Score = 138 bits (152), Expect = 1e-27 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||||||||||| ||||| || || | |||||| || ||||| ||||||||||| | Sbjct 32427 CCGCCGCGCAATCGCAGCACCAGGTGCAACGTCGACTCCTTTTGGATGTTGTAATCCGAC 32486 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || | |||||||||||| | ||||| || ||||| || || ||| Sbjct 32487 AGCGTGCGGCCATCCTCCAATTGCTTGCCGGCAAAGATGAGTCGTTGCTGATCAGGCGGA 32546 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCG--TCCA 64394 || || || || ||||| || |||||||| ||| || | || || ||| || || | Sbjct 32547 ATACCCTCCTTGTCTTGGATCTTTTGCTTCACATTATCAATTGAAT--CCGACGATTCAA 32604 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | || | ||||||||| || | || || ||||| |||||||| Sbjct 32605 CCTCAAGTGTGATGGTCTTGCCAGTGAGCGTCTTGACGAAGATTTGCAT 32653 >seq45 Length=303593 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | || || | || | ||| ||||| ||||| |||||||| || | | Sbjct 86882 CCACCGCGCAGACGGAGGACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCAGAG 86823 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || |||||||||||||| ||||||| ||||||||||| ||||| Sbjct 86822 AGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGAGGG 86763 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || ||||| || ||||| || |||||||| ||| || | | ||| | ||||| Sbjct 86762 ATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTGTCGATGGAATCGGACGACTCCACC 86703 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||| || | || || |||||||| ||||| Sbjct 86702 TCCAAGGTGATGGTCTTGCCAGTGAGCGTCTTGACGAAAATCTGCAT 86656 Score = 134 bits (148), Expect = 1e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || ||||||||||| | | |||||| ||||||| | ||||||||| Sbjct 87308 GTGGATTCCTTCTGGATGTTGTAATCAGACAAGGTGCGGCCGTCTTCCAATTGCTTGCCG 87249 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||| |||||||||||||| ||||| ||||| || ||||| || |||||||| Sbjct 87248 GCAAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCTTGGATCTTTTGCTTG 87189 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | | || | || || || | ||| | ||||||||||||||| || Sbjct 87188 ACATTGTCGATGGAGTCGGACGATTCGACCTCCAAAGTGATGGTCTTGCCGGTCAAGGTC 87129 Query 64427 TTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 87128 TTGACAAAGATCTGCAT 87112 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 64246 CGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCC 64305 ||| ||||| ||||| |||||||| || | | ||||| ||||||| | || ||||| Sbjct 87537 CGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGCGTGCGGCCGTCTTCCAATTGTTTGCC 87478 Query 64306 GGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTT 64365 |||| | ||||| ||||| ||||||||||| || ||||| || ||||| || |||||||| Sbjct 87477 GGCAAAGATGAGGCGCTGTTGGTCGGGAGGGATGCCTTCCTTGTCTTGGATCTTTTGCTT 87418 Query 64366 TACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | | ||| | || || || | ||| | ||||||||||||||| || Sbjct 87417 GACATTGTCGATGGAATCGGACGATTCGACCTCCAAAGTGATGGTCTTGCCGGTCAAGGT 87358 Query 64426 TTTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 87357 CTTGACAAAGATCTGCAT 87340 Score = 122 bits (134), Expect = 9e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || ||||| |||||||| || | | ||||| |||| || |||||||||||| Sbjct 86624 GTGGACTCCTTTTGGATGTTGTAGTCAGACAGCGTGCGGCCGTCCTCCAGCTGCTTGCCG 86565 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| | |||||||| ||||| ||||| || || || ||||| ||||| ||||| Sbjct 86564 GCAAAAATCAAACGCTGCTGATCGGGGGGAATGCCCTCCTTGTCTTGGATTTTCTGCTTG 86505 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | | ||| | || || || | ||| | ||||||||| || | ||| Sbjct 86504 ACGTTGTCGATAGAATCGGACGACTCGACCTCCAGAGTGATGGTCTTGCCAGTGAGAGTC 86445 Query 64427 TTTACGAAAATTTGCAT 64443 || |||||||||||||| Sbjct 86444 TTGACGAAAATTTGCAT 86428 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | || || | || | ||| ||||| |||||||||||||| || | | Sbjct 87110 CCACCGCGCAGGCGGAGAACCAAGTGGAGCGTGGATTCCTTTTGAATGTTGTAGTCAGAG 87051 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || | ||||||||||| |||| | ||||||||||| ||||| Sbjct 87050 AGCGTGCGGCCATCCTCCAATTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGG 86991 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || ||||| || ||||| ||||| ||||| ||| || | | || | ||||| Sbjct 86990 ATGCCTTCCTTGTCTTGAATTTTCTGCTTGACATTGTCAATGGAGTCGGACGACTCCACC 86931 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||| || | || || ||||| |||||||| Sbjct 86930 TCGAGTGTGATGGTCTTGCCAGTGAGCGTCTTGACGAAGATTTGCAT 86884 >seq1 Length=1252801 Score = 96.9 bits (106), Expect = 3e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | |||||| ||||||| | ||||||||| Sbjct 333536 GTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCGTCTTCCAACTGCTTGCCA 333595 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | |||||||||||||| ||||| ||||| || ||||| || |||||||| Sbjct 333596 GCGAAGATCAAGCGCTGCTGGTCGGGGGGAATACCTTCCTTGTCTTGGATCTTTTGCTTG 333655 Query 64367 ACA 64369 ||| Sbjct 333656 ACA 333658 >seq94 Length=66050 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 |||||||| ||||| |||||||| || | | ||||| | ||||| | ||||||||| Sbjct 22829 GTCGATTCCTTTTGGATGTTGTAGTCAGACAACGTGCGGCCATCTTCCAATTGCTTGCCG 22888 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | ||||||||||| || || || || || || ||||| || |||||||| Sbjct 22889 GCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATCTTTTGCTTG 22948 Query 64367 ACA 64369 ||| Sbjct 22949 ACA 22951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499643869411560