Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq61 208 8e-49 seq65 93.3 4e-14 >seq61 Length=186913 Score = 208 bits (230), Expect = 8e-49 Identities = 602/923 (65%), Gaps = 20/923 (2%) Strand=Plus/Minus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||| | || |||| ||||| || || ||| || || | |||||||| |||||| | Sbjct 185133 TACAACTATTTTGGTTTCAAGACGCTCGAGCGTTCATATTTGCTCAAGATCAATGGCAAG 185074 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || | ||||| ||||| || || | ||||| || || | || || || ||| | ||| Sbjct 185073 GTGGCGGAGCGTCCGCAGCATTTGATCATGCGTGTGGCTGTTGGTATCCATGGCGAAGAC 185014 Query 93838 AT----GCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATG-- 93891 || |||| |||| | | | | |||| ||| | | | || | Sbjct 185013 ATTGATGCCGC----TTTGGAGACGTACCAGCTCATGTCGGA---GCGATTCTTCACGCA 184961 Query 93892 -GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCT 93950 || | |||||| ||||||| || || || || || || ||||| ||||| ||| | Sbjct 184960 CGCGAGCCCGACGTTGTTCAATGCCGGCACGCCTCGCCCGCAAATGTCGTCGTGCTTCTT 184901 Query 93951 GATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGAC 94010 | |||| | |||| ||||| || || || | ||| | |||||| ||||||| Sbjct 184900 GCTGACTATGAAGGAGGACTCGATTGAGGGCATCTACGAGACGCTCAAGTGCTGTGCGCA 184841 Query 94011 CATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTC 94070 ||||| || || || || || || | | ||||| || | || |||| ||| || Sbjct 184840 AATCTCCAAGACGGCCGGCGGCATTGGCTTGAACATCCACAACATCCGCGCCACGGGCTC 184781 Query 94071 CTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAA 94130 ||||| ||| ||||||||||| |||| || || | |||||||| || || ||||| Sbjct 184780 GTACATTGCCGGCACCAATGGCACGGCCAATGGTCTGTTGCCTATGCTGCGCGTGTTCAA 184721 Query 94131 CAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTA 94190 |||| ||||||||||||| ||||| || || | | | |||| | || || | || Sbjct 184720 CAACACGGCGCGCTACGTTGACCAAGGAGGGAACAAGCGCCCGGGTGCGTTTGCCATGTA 184661 Query 94191 TCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAA 94250 |||||||| |||||||| ||| | | || | || |||| |||||| ||||| Sbjct 184660 CCTCGAGCCTTGGCACGCCGACATTTTCACCTTTTTGGAATTGCGCAAGAACGTGGGCAA 184601 Query 94251 CGATCTGGAGA---GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTAT 94307 || |||| | || | || | || ||||| ||||||||||| || | || || Sbjct 184600 GGA---CGAGATCCGCGCGCGCGATTTGTTTTACGCGCTCTGGGTGCCTGATTTGTTCAT 184544 Query 94308 GAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACT 94367 ||| || |||||| || || |||| || ||||| ||||| || ||| | Sbjct 184543 GAAGCGTGTCGAGGCCAATGGCGACTGGTCGCTCTTTTGCCCCAACGAGGCGCCCAATTT 184484 Query 94368 GTCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAA 94427 | ||| || || || || || | ||||| || |||||| | ||||| Sbjct 184483 GCACGAGGTGTGGGGCGATGAATTCGAGGCCTTGTTTGAAAAGTACGAAAAGGAGGGCCG 184424 Query 94428 GGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGA 94487 || | || || | || ||| ||||| | ||| | || | ||| || Sbjct 184423 TGCGCGCCAGACGATCAAGGCGCAAAAGTTGTGGTACGCGATTCTCGAGGCCCAGACCGA 184364 Query 94488 GACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCA 94547 |||||| | || | |||||||| ||||||| | |||| ||| |||||||||||| | Sbjct 184363 GACGGGCAATCCGTTCATCTTGTACAAGGACGCGTGCAACCGCAAATCCAACCAGCAGAA 184304 Query 94548 CCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGA 94607 |||||| ||||| || ||| ||||||| ||||||||||| || | || || Sbjct 184303 CCTCGGCACCATCAAATGCAGCAATTTGTGCACGGAGATTGTCGAATACTCGAGCCCCGA 184244 Query 94608 CGAGATTGCTGTGTGTAACCTGG 94630 |||||||| ||||| ||| ||| Sbjct 184243 TGAGATTGCCGTGTGCAACTTGG 184221 >seq65 Length=159763 Score = 93.3 bits (102), Expect = 4e-14 Identities = 155/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 94994 AGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAAG 95053 ||||| | || || |||||| | |||| ||| |||||||| | || | || ||||| | Sbjct 95188 AGGGCGTCTTCCAATTCGACATGTGGGATGTCAAGCCCTCCGATCGCTGGGATTGGGACG 95129 Query 95054 CTCTACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGC 95113 | || ||| | || || ||||||||||| || |||| || || || ||||||| Sbjct 95128 CCCTCCGCACCCGCGTCATGCAACACGGTGTGCGCAATTCGCTCCTCGTCGCACCCATGC 95069 Query 95114 CCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCA 95173 |||| || ||| |||||||| |||||||| |||| || || || | ||| || Sbjct 95068 CCACTGCAAGCACAAGCCAGATCCTCGGCAACAATGAGTGTTTTGAGCCATACACAAGCA 95009 Query 95174 ACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATC 95217 || | |||| | || || ||| ||| || |||| ||| || Sbjct 95008 ACATCTACACTCGTCGTGTCCTCAGCGGCGAGTTCCAAGTCGTC 94965 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 95320 ATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGATA 95379 || || || ||| |||||||||| |||||||| |||||||||||| ||||||||||||| Sbjct 94617 ATCCCCGACGACCTCAAGGCGCTGTACAAGACGGTGTGGGAGATCTCGCAGCGCGTGATC 94558 Query 95380 CTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAG 95420 ||||| || || | |||||| | ||||| |||||| Sbjct 94557 ATCGACATGGCTGCGGACCGCGGCGCGTTCATTGACCAGAG 94517 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 94066 GGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTC 94125 || || ||||| ||| || |||||||| ||||| ||| | || || ||| | || || Sbjct 96301 GGGTCGTACATTGCCGGGACAAATGGCACGTCCAATGGCATTGTGCCCATGTTGCGCGTG 96242 Query 94126 TTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCG 94185 | ||| | ||||||||| ||| || |||||||| | | | || || ||||| Sbjct 96241 TACAATGATACGGCGCGCTTTGTGACGCAAGGTGGTGGCAAGCGCAACGGCAGCTTCGCC 96182 Query 94186 GTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCAC 94245 | |||||||||||||||||| ||||||| | || | || ||||| |||||| Sbjct 96181 ATGTATCTCGAGCCCTGGCACACGGACGTATTTGACTTTTTGGATCTGCGCAAGAACTCG 96122 Query 94246 GGCAACGA 94253 ||||| || Sbjct 96121 GGCAAGGA 96114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494722278578040