Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq61 212 6e-50 seq33 152 5e-32 seq30 131 2e-25 seq45 114 1e-20 >seq61 Length=186913 Score = 212 bits (234), Expect = 6e-50 Identities = 962/1498 (64%), Gaps = 48/1498 (3%) Strand=Plus/Plus Query 153080 AGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCAT 153139 |||| | || || ||| | || || ||| || ||||| | ||||| ||||| ||||| Sbjct 183697 AGTGTAGGGCTCGAAGCACTCATTGAAGCCGAGCATTTGCGACGTGGAGGCGGTGGGCAT 183756 Query 153140 GTACGCCACCAACAAAGAATTCCGCAAGCCGTGC-GCTCGAA-TGTCGTCCTTCAACGCC 153197 | || || | ||| || || || | |||||| | ||| ||| | ||| | | Sbjct 183757 GGGGGCGACAAGCAATGAGTTGCGGACACCGTGCTGGGCGACCTGTTG--CTTGAGAGTG 183814 Query 153198 TGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCC--TC 153255 ||||||||| || | | || ||| |||||||||| |||||||| || | || | Sbjct 183815 GCCCAATCCCAAAGATCAGTGGGGGTCACGTTCCACATATCGTACTGGAAGATGCCCTTG 183874 Query 153256 GACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGC 153315 ||| |||| ||||| || | || |||| ||| | | | |||| ||| | Sbjct 183875 GACA--CGGGGCTGCCTTCATAGGTCTCGTAGGGGCCTTGGACGCGCGCCAATTCCATGG 183932 Query 153316 TAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTT 153375 | ||| | ||| | | ||| |||||||| |||||| | ||||| | |||| Sbjct 183933 ATGTCTCCATGGCGGCGTGGTAAATGGTTTCAAAGATTTGAATGTTGAGCATCTTGGCTT 183992 Query 153376 CTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGA 153435 | || ||| | || ||||| |||| |||| ||| ||||| |||||||| || | Sbjct 183993 CCTCCGAGTCGAATGGATAGCGCATGAGCATGAAGGTGTCAGCCAGGCCCTGGATGCCCA 184052 Query 153436 CGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCT-ATGGGATAGTGATTG 153494 ||| ||||| || || |||| ||| ||| ||| | | ||| || | |||| Sbjct 184053 AGCCAATGGGGCGGTGGCGAAGGTTGGATCGC-TCGGCCTCAATGACGGGGTAATAATTG 184111 Query 153495 CGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCG 153554 |||||| || ||||| | |||||| | ||| || | | | | ||||| | Sbjct 184112 ACATCGATGATCTTGTTCAAATTGCGCGTGATCACCTTGACAACCTGGTGCAATTTCTTG 184171 Query 153555 AAATCATAGGTCATTTCGTCGACGCGTACGCATCGATT-CACGGCAATAGACGCCAGATT 153613 |||||| | ||| | || |||| ||| || ||| || ||||| |||| || Sbjct 184172 AAATCAAACGTCTTGCGGTTGACG---ACGTAT-GATGGCAACGCAATGCTGGCCAAGTT 184227 Query 153614 ACAGACGGCCGTCTCTTCGGCG-TCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGC 153672 || ||||| |||| |||| | ||| ||| | || ||||| | ||| | ||||||| Sbjct 184228 GCACACGGCAATCTCATCGGGGCTCGA-GTATTCGACAATCTCCGTGCACAAATTGCTGC 184286 Query 153673 ATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCA 153732 |||| ||| ||| | || ||||| ||| |||||| ||||||||||| ||| | | | Sbjct 184287 ATTTGATGGTGCCGAGGTTCTGCTGGTTGGATTTGCGGTTGCACGCGTCCTTGTACAAGA 184346 Query 153733 TGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTA-TGCAGGTCCTGCGCT 153791 || |||| ||| |||||| || | |||| || | || || | ||||| Sbjct 184347 TGAACGGATTGCCCGTCTCGGTCTGGGCCTCGA-GAATCGCGTACCACAACTTTTGCGCC 184405 Query 153792 CGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCG 153851 | | ||| || |||||||| | ||||| || ||| ||| || || Sbjct 184406 TTGATCGTCTGGCGCGCACGGCCCTCCTTTTCGTACTTTTCAAACAAGGCCTCGAATTCA 184465 Query 153852 TCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCG 153911 ||||| | ||| | ||| || | || || | |||||||| | Sbjct 184466 TCGCCCCACACCTCGTGCAAATTGGGCGCCTCGTTGGGGCAAAAGAGCGACCAGTCGCCA 184525 Query 153912 TCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGC 153971 | ||| | ||| || |||||||| ||| ||||||||||||||||| | | |||||| Sbjct 184526 TTGGCCTCGACACGCTTCATGAACAAATCAGGCACCCAGAGCGCGTAAAACAAATCGCGC 184585 Query 153972 GCCTTGCAATCCTCCGCGCCCA---TGTTGCGTTTCAGATTGAGCACGCTATAGATGTCG 154028 || | || ||| ||||| | ||||| || | | | | | | |||||| Sbjct 184586 GCGCGGATCTCGTCCTTGCCCACGTTCTTGCG---CAATTCCAAAAAGGTGAAAATGTCG 184642 Query 154029 GCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCG 154085 |||||||| || || | ||| | ||| | ||||| ||| || || || || || Sbjct 184643 GCGTGCCAAGGCTCGAGGTACATGGCAAACGCACCCGGGCGCTTGTTCCCTCCTTGGTCA 184702 Query 154086 ACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCG 154145 |||| |||| || | |||||||| ||||||| ||| || ||| || | || ||||| Sbjct 184703 ACGTAGCGCGCCGTGTTGTTGAACACGCGCAGCATAGGCAACAGACCATTGGCCGTGCCA 184762 Query 154146 TTGGT---CGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATG 154202 ||||| | | || | || ||| |||||| | | || | ||| | ||||||| Sbjct 184763 TTGGTGCCGGCAATGTACGAGC--CCG-TGGCGCGGATGTTGTGGATGTTCAAGCCAATG 184819 Query 154203 CCGCC-GCCGTACTTTGATAT---GGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCGTC 154258 ||||| ||||| ||| || || ||| ||| | | |||||| ||||||||| || Sbjct 184820 CCGCCGGCCGT-CTTGGAGATTTGCGCACAGCACTTG---AGCGTCTCGTAGATGCCCTC 184875 Query 154259 GATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCC 154318 || || || | |||||||| ||||| |||||||||| |||| || Sbjct 184876 AATCGAGTCCTCCTTCATAGTCAGCAAGAAGCACGACGACATTTGCGGGCGAGGCGTGCC 184935 Query 154319 CGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGT 154378 || || | || || ||||||||||| || | | | ||| | ||||||| Sbjct 184936 GGCATTGAACAACGTCGGGCTCGCGTGCGTGAAGAATCGCTCCGACATGAGCTGGTACGT 184995 Query 154379 TTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTG 154438 || | ||| | || || || ||||| || || || | || || ||||||| || || Sbjct 184996 CTCCAAAGCGGCATCAATGTCTTCGCCATGGATACCAACAGCCACACGCATGATCAAATG 185055 Query 154439 CTGCGGACGTTCGGCGAC---TCTATTGTCAATCTTCAAGAGATATCCATTTTCGAGGGT 154495 ||||||||| || || || | |||| ||||| | | |||| | ||||| || Sbjct 185056 CTGCGGACGCTCCGCCACCTTGCCATTG---ATCTTGAGCAAATATGAACGCTCGAGCGT 185112 Query 154496 TTTGTAACCGAAATACTTGTATTCAAAATCTAGCTCATGAGCGATGGCCGCATCGAGC 154553 ||| |||| ||||| ||||| |||| || | |||| ||| |||| || |||| Sbjct 185113 CTTGAAACCAAAATAGTTGTAGCCAAAGTCACGATCATAGATGATCGCCGAATTGAGC 185170 >seq33 Length=455653 Score = 152 bits (168), Expect = 5e-32 Identities = 331/491 (67%), Gaps = 16/491 (3%) Strand=Plus/Minus Query 52344 AAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACGCTGGCCGAGCGCATG 52403 ||||| | |||||| | |||||| |||| ||| | ||| | ||||||||| | Sbjct 391282 AAGGCCGACTGGGCATTCCGCTGGATCTCGAGCAACAAC---ACGTTTGCCGAGCGCCTT 391226 Query 52404 GTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTAC 52463 || || || || || |||||| | || || || || ||||| ||||||||| Sbjct 391225 GTTGCTTTTGCGGCGGTTGAGGGCATTTTCTTCTCTGGTGCGTTTGCGTCCATCTTTTGG 391166 Query 52464 ATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGAC 52523 | || | | ||| | ||||| ||| |||||||| ||||||| |||| | || ||| Sbjct 391165 CTCAAGAAGCGCGGCTTGATGCCTGGCTTGACGTTCTCCAACGAGCTGATTTGCCGTGAC 391106 Query 52524 GAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTG 52583 || || |||||||||||||||||||||| || || | | || || | | Sbjct 391105 GAGGGTTTGCACACGGACTTTGCGTGCCTGCTCTTTG----GC-CATCTGCGCAACAC-G 391052 Query 52584 GATTCGGACACGATCCTGAGC-----ATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGT 52638 ||| | || | || || || ||| ||||| || || || | || | Sbjct 391051 CCTTCCAAT--GACCGTGTGCGCGATATCATCACCGAGGCCGTCAAGATTGAGCAAGAAT 390994 Query 52639 TTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGT 52698 | | || | ||||||||| |||| ||| | ||||||||| | || ||||||| | | Sbjct 390993 TCCTGACCGACGCGCTGCCTGTCGCGCTCATTGGCATGAACTCCAAGCTCATGTGCCAAT 390934 Query 52699 ACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACG 52758 |||| || ||||| ||||| || ||| | || || || ||| ||| ||| ||| | Sbjct 390933 ACATTGAATTTGTTGCGGACCGCCTGCTCGTTGCTCTTGGCCAGGACAAGCACTACAAGG 390874 Query 52759 CTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCG 52818 | |||||| ||||| |||||| || ||| ||||| ||||||||||||| || || | Sbjct 390873 CAACCAATCCCTTTGACTTTATGGACCTCATCTCGCTCCAGGGCAAGACCAATTTCTTTG 390814 Query 52819 AGAAGCGAGTC 52829 ||||||| ||| Sbjct 390813 AGAAGCGTGTC 390803 >seq30 Length=460931 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||||| || || || | | || |||||||| |||||||||||| Sbjct 195517 GCCACCGCGGAGACGCAGGACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCGGA 195576 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || |||||||| || || |||| | |||| || ||||| ||||| ||||| Sbjct 195577 CAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCGGGAGG 195636 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| ||||| ||| ||||| || | |||| || | || || | |||||| | Sbjct 195637 GATACCTTCCTTGTCCTGGATCTTTTGCTTGACATTG-TCGATGGAATCCGACGACTCGA 195695 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| || | || || ||||||| ||| || ||||| |||||||| Sbjct 195696 CCTCGAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 195744 Score = 107 bits (118), Expect = 2e-18 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| ||||||||||| || || || |||||||| || || |||| | Sbjct 196235 GACTCCTTTTGGATGTTGTAGTCAGACAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCA 196294 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| ||||| || || ||||| || ||||| || ||||| || | | Sbjct 196295 AAGATAAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCTTGAATCTTTTGCTTGACA 196354 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | | ||| | |||||| ||||| | || | || || ||||| ||||| || Sbjct 196355 TTG-TCAATAGAGTCCGACGACTCGACCTCCAGAGTGATGGTCTTGCCAGTGAGAGTCTT 196413 Query 138600 TACAAAAATCTGCATG 138615 || ||||| |||||| Sbjct 196414 GACGAAAATTTGCATG 196429 >seq45 Length=303593 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| || | ||| | || || || | | || |||||||| |||||||||||| Sbjct 87567 GCCGCCACGGAGACGGAGGACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCGGA 87508 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || ||| || | |||||| |||| | |||| || ||||||||||| ||||| Sbjct 87507 AAGCGTGCGGCCGTCTTCCAATTGTTTGCCGGCAAAGATGAGGCGCTGTTGGTCGGGAGG 87448 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| ||||| || | |||| || | || |||| ||| || | Sbjct 87447 GATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTG-TCGATGGAATCGGACGATTCGA 87389 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| | || | || || || |||| || || ||||| ||||||||| Sbjct 87388 CCTCCAAAGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCATG 87339 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||| | || || || | | || |||||||| ||||||||||| Sbjct 86883 GCCACCGCGCAGACGGAGGACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCAGA 86824 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || |||||||| || || |||| | || || ||||| ||||| ||||| Sbjct 86823 GAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGAGG 86764 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| ||||| || | ||||| | | || |||| |||||||| Sbjct 86763 GATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTGT-CGATGGAATCGGACGACTCCA 86705 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || ||||| || || || || ||||||||||| Sbjct 86704 CCTCCAAGGTGATGGTCTTGCCAGTGAGCGTCTTGACGAAAATCTGCAT 86656 Score = 105 bits (116), Expect = 7e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| || | ||| || || | | || |||||||||||||||||||| Sbjct 87111 GCCACCGCGCAGGCGGAGAACCAAGTGGAGCGTGGATTCCTTTTGAATGTTGTAGTCAGA 87052 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || ||||| | ||| || |||| | || | |||||| ||||| ||||| Sbjct 87051 GAGCGTGCGGCCATCCTCCAATTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCAGGAGG 86992 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||||| || || | ||||| | | || ||||| |||||||| Sbjct 86991 GATGCCTTCCTTGTCTTGAATTTTCTGCTTGACATTGT-CAATGGAGTCGGACGACTCCA 86933 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||||| || | || || ||||| || || || || || || |||||| Sbjct 86932 CCTCGAGTGTGATGGTCTTGCCAGTGAGCGTCTTGACGAAGATTTGCATG 86883 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||| ||| || || | | ||||||||||| ||||||||||| | Sbjct 86654 CCACCACGGAGACGCAGAACCAAGTGCAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAC 86595 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| || || || |||| | | || | |||||| || || || || Sbjct 86594 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAAATCAAACGCTGCTGATCGGGGGGA 86535 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| |||||| || || | | || | | |||| |||||| ||| Sbjct 86534 ATGCCCTCCTTGTCTTGGATTTTCTGCTTGACGTTGTCGATAGAATCGGACGACTCGACC 86475 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| ||||| || || ||||| ||||| Sbjct 86474 TCCAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAAATTTGCAT 86428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261475711280