Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq45 125 7e-24 seq30 109 5e-19 seq61 95.1 1e-14 seq56 93.3 4e-14 seq94 84.2 2e-11 >seq45 Length=303593 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | || ||||| ||||| || ||||| || | Sbjct 86654 CCACCACGGAGACGCAGAACCAAGTGCAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAC 86595 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || || | ||||| |||||||||||||| || Sbjct 86594 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAAATCAAACGCTGCTGATCGGGGGGA 86535 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||||||||| |||||||||||||| |||| |||| | || | |||||| Sbjct 86534 ATGCCCTCCTTGTCTTGGATTTTCTGCTTGACGTTG-TCGATAGAATCGGACGACTCGAC 86476 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||| || ||||| || || ||||| ||||| Sbjct 86475 CTCCAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAAATTTGCAT 86428 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | ||| || || |||||||| ||||| || Sbjct 87110 CCACCGCGCAGGCGGAGAACCAAGTGGAGCGTGGATTCCTTTTGAATGTTGTAGTCAGAG 87051 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || | || || || ||| | ||||| |||||||| || ||||| Sbjct 87050 AGCGTGCGGCCATCCTCCAATTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGG 86991 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| |||||||| ||||||||||||| | || | || ||| | ||| || Sbjct 86990 ATGCCTTCCTTGTCTTGAATTTTCTGCTTGACATTGTCAATGGAGTCGGACGACTCCACC 86931 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| || | || ||||| || || || || || || || |||||| Sbjct 86930 TCGAGTGTGATGGTCTTGCCAGTGAGCGTCTTGACGAAGATTTGCATG 86883 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | ||| || || ||||| || ||||| || Sbjct 86882 CCACCGCGCAGACGGAGGACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCAGAG 86823 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || || ||| | || | |||||||| || ||||| Sbjct 86822 AGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGAGGG 86763 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| |||||||| ||| || ||||||| | |||| || || | ||| || Sbjct 86762 ATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTGTCGATGGAATCGGACGACTCCACC 86703 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || ||||| || || || || || ||||||||||| Sbjct 86702 TCCAAGGTGATGGTCTTGCCAGTGAGCGTCTTGACGAAAATCTGCAT 86656 >seq30 Length=460931 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | ||| ||||| ||||| || ||||| || | Sbjct 196202 CCACCACGGAGACGGAGCACCAAGTGCAACGTGGACTCCTTTTGGATGTTGTAGTCAGAC 196261 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || || || |||| | |||||||| ||||| || Sbjct 196262 AGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCGGGGGGA 196321 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || ||||||||||| || || ||||||| | || | | ||||| |||||| Sbjct 196322 ATACCCTCCTTGTCTTGAATCTTTTGCTTGACATTGTCAATAGAGTCCGACGACTCGACC 196381 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | || ||||| || ||||| || || ||||| |||||| Sbjct 196382 TCCAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAAATTTGCATG 196429 >seq61 Length=186913 Score = 95.1 bits (104), Expect = 1e-14 Identities = 198/288 (69%), Gaps = 8/288 (3%) Strand=Plus/Plus Query 147268 GTCTTGTAGATGCCGTCGATGCTGTCTTCCTTGATGCATTGCAGGAAACACGAACACATT 147327 |||| ||||||||| || || ||| ||||| || ||| ||| ||||| ||||| Sbjct 184859 GTCTCGTAGATGCCCTCAATCGAGTCCTCCTTCATAGTCAGCAAGAAGCACGACGACATT 184918 Query 147328 TGGGGACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGA--ACGTGCCCA 147385 || || ||| |||||| || |||| ||| ||||| |||||||||| | || | Sbjct 184919 TGCGGGCGAGGCGTGCCGGCATTGAACAACGTCGGGCTCGCGTGCGTGAAGAATCGCTCC 184978 Query 147386 GACTCATCAATTGATACGTTTCAATGGCGCTCAT-AACGTCATCGCCGTGAATGGCCAGG 147444 || ||| | || ||||| || | ||| ||| || ||| ||||| || || | | Sbjct 184979 GA--CATGAGCTGGTACGTCTCCAAAGCG-GCATCAATGTCTTCGCCATGGATACCAACA 185035 Query 147445 GCGACGCGCATGAGCATGTGCTGGGGTCGTTCCGCAATCACGTCATTGACTTTTAATAGA 147504 || || ||||||| || ||||| || || ||||| | | | |||||| || | | | Sbjct 185036 GCCACACGCATGATCAAATGCTGCGGACGCTCCGCCACCTTGCCATTGATCTTGAGCAAA 185095 Query 147505 TATCCATTGGTC-AGAGTTTTGAAACCAAAGTACTTGTAGTCGTAGTC 147551 ||| | | || || || ||||||||||| || |||||| | |||| Sbjct 185096 TAT-GAACGCTCGAGCGTCTTGAAACCAAAATAGTTGTAGCCAAAGTC 185142 >seq56 Length=224513 Score = 93.3 bits (102), Expect = 4e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| ||||||| ||||| || | ||| ||||| ||||| || |||||||| | Sbjct 32427 CCGCCGCGCAATCGCAGCACCAGGTGCAACGTCGACTCCTTTTGGATGTTGTAATCCGAC 32486 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || | || || || || |||| | ||| |||||||| || || Sbjct 32487 AGCGTGCGGCCATCCTCCAATTGCTTGCCGGCAAAGATGAGTCGTTGCTGATCAGGCGGA 32546 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 || ||||||||||| ||| || ||||| Sbjct 32547 ATACCCTCCTTGTCTTGGATCTTTTGCTT 32575 >seq94 Length=66050 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || || || ||||| || ||||| || | Sbjct 22799 CCACCACGGAGACGAAGGACCAAGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCAGAC 22858 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || | || || || ||| ||||||| |||||||| || || || Sbjct 22859 AACGTGCGGCCATCTTCCAATTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGGGGG 22918 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA 127037 |||||||||||||| ||| || ||||||| Sbjct 22919 ATGCCCTCCTTGTCTTGGATCTTTTGCTTGA 22949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475499914379760