Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq45 118 1e-21 seq30 113 4e-20 seq56 89.7 5e-13 >seq45 Length=303593 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || ||||| ||||||||||| || || || || || || ||| |||||||| Sbjct 87086 TGGAGCGTGGATTCCTTTTGAATGTTGTAGTCAGAGAGCGTGCGGCCATCCTCCAATTGC 87027 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | ||||| || |||||||| || || |||||||| || ||||||||||| Sbjct 87026 TTGCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGAATTTTC 86967 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || |||| || | || |||||| ||||| || ||||| || | || ||||| || Sbjct 86966 TGCTTGACATTGTCAATGGAGTCGGACGACTCCACCTCGAGTGTGATGGTCTTGCCAGTG 86907 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || || || |||||||| Sbjct 86906 AGCGTCTTGACGAAGATTTGCAT 86884 Score = 102 bits (112), Expect = 7e-17 Identities = 165/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | || || | ||||| || || ||||||||||| || || || Sbjct 86657 ATACCACCACGGAGACGCAGAACCAAGTGCAGAGTGGACTCCTTTTGGATGTTGTAGTCA 86598 Query 45171 CTGACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | | || |||| || || || || | ||||| || ||||| || | Sbjct 86597 --GACAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAAATCAAACGCTGCTGATCGG 86540 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287 | |||||||| || || ||||| ||||| || |||| || | || | | ||||| ||| Sbjct 86539 GGGGAATGCCCTCCTTGTCTTGGATTTTCTGCTTGA-CGTTGTCGATAGAATCGGACGAC 86481 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || ||||| | || ||||| || ||||| || || ||||||||||| Sbjct 86480 TCGACCTCCAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAAATTTGCAT 86428 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 |||| || |||||||| ||||| || ||||| | ||| || |||||||| Sbjct 87314 TGCAAGGTGGATTCCTTCTGGATGTTGTAATCAGACAAGGTGCGGCCGTCTTCCAATTGC 87255 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | || | || |||||||| || ||||||||||| || ||||| || ||| Sbjct 87254 TTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCTTGGATCTTT 87195 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || |||| || | || |||||| || ||||| || | ||| | || |||||||| Sbjct 87194 TGCTTGACATTGTCGATGGAGTCGGACGATTCGACCTCCAAAGTGATGGTCTTGCCGGTC 87135 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 | || || ||||| || ||||| Sbjct 87134 AAGGTCTTGACAAAGATCTGCAT 87112 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || ||||| |||||||||||||| || || ||| | || || ||||||||| Sbjct 87542 TGGAGCGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGCGTGCGGCCGTCTTCCAATTGT 87483 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | || | || || ||||| || || |||||||| || ||||| || ||| Sbjct 87482 TTGCCGGCAAAGATGAGGCGCTGTTGGTCGGGAGGGATGCCTTCCTTGTCTTGGATCTTT 87423 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || |||| || | || ||||| || ||||| || | ||| | || |||||||| Sbjct 87422 TGCTTGACATTGTCGATGGAATCGGACGATTCGACCTCCAAAGTGATGGTCTTGCCGGTC 87363 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 | || || ||||| || ||||| Sbjct 87362 AAGGTCTTGACAAAGATCTGCAT 87340 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || ||||| |||||||||||||| || || || || || ||| || | || Sbjct 86858 TGGAGCGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGCGTGCGGCCATCCTCGAGCTGC 86799 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | || | || |||||||| || || |||||||| || ||||| || ||| Sbjct 86798 TTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTT 86739 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || |||| || | || ||||| ||||| || || | || | || ||||| || Sbjct 86738 TGCTTGACATTGTCGATGGAATCGGACGACTCCACCTCCAAGGTGATGGTCTTGCCAGTG 86679 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || || ||||| ||||| Sbjct 86678 AGCGTCTTGACGAAAATCTGCAT 86656 >seq30 Length=460931 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | ||| | ||||||||| || |||||||| || || || || Sbjct 195743 ATACCACCACGGAGACGGAGCACCAAATGCAGCGTGGACTCCTTTTGAATGTTGTAGTCA 195802 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || || |||||||| || || ||| | || | || |||||||| || Sbjct 195803 GAGAGCGTGCGGCCGTCTTCCAATTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGG 195862 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| || |||||||| ||||| |||| || | | ||||| || ||| Sbjct 195863 GGAATGCCTTCCTTGTCTTGAATCTTTTGCTTGACATTGTCGATCGAATCGGACGATTCG 195922 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| | || ||||| || || || || ||||| |||||||| Sbjct 195923 ACTTCCAAAGTGATGGTCTTGCCAGTGAGCGTCTTGACAAAGATTTGCAT 195972 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||||||||| || ||||| | ||| ||| |||||||| Sbjct 195998 TGGAGGGTAGATTCCTTTTGGATGTTGTAATCAGACAAGGTGCGGCCATCTTCCAATTGC 196057 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | || | || |||||||| || || |||||||| || || || || ||| Sbjct 196058 TTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTT 196117 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || |||| || | || || || |||||||| ||||| || | || ||||| || Sbjct 196118 TGCTTGACATTATCAATGGAATCCGACGACTCGACCTCGAGCGTGATGGTCTTGCCAGTC 196177 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 | ||| || ||||| || ||||| Sbjct 196178 AAAGTCTTAACAAAGATCTGCAT 196200 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | ||| | |||| ||| || ||||||||||| || || || Sbjct 196199 ATACCACCACGGAGACGGAGCACCAAGTGCAACGTGGACTCCTTTTGGATGTTGTAGTCA 196258 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | | ||| || | || || || || | || | || |||||||| | Sbjct 196259 --GACAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCGG 196316 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||| || || || |||||||| ||||| |||| || | | ||| || |||| Sbjct 196317 GGGGAATACCCTCCTTGTCTTGAATCTTTTGCTTGACATTGTCAATAGAGTCCGACGACT 196376 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || ||||| | || ||||| || ||||| || || ||||||||||| Sbjct 196377 CGACCTCCAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAAATTTGCAT 196428 Score = 89.7 bits (98), Expect = 5e-13 Identities = 163/236 (69%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 45109 TTATT--CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATA 45166 ||||| || |||||||| | || || | || ||||| |||||||||||||| || || Sbjct 195511 TTATTGGCCACCGCGGAGACGCAGGACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTA 195570 Query 45167 ATCGCTGACGGTTTTAG--AATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGG 45224 ||| ||| | | | ||| || | || || || || | || | || |||||| Sbjct 195571 GTCG--GACAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGG 195628 Query 45225 TCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAA 45284 || || || || ||||| || || || || ||||| |||| || | || || || Sbjct 195629 TCGGGAGGGATACCTTCCTTGTCCTGGATCTTTTGCTTGACATTGTCGATGGAATCCGAC 195688 Query 45285 GACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| ||||| || | || ||||| || | ||| || ||||| || ||||| Sbjct 195689 GACTCGACCTCGAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 195744 >seq56 Length=224513 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| | | || ||| || |||| ||| || ||||||||||| || |||| Sbjct 32424 ATGCCGCCGCGCAATCGCAGCACCAGGTGCAACGTCGACTCCTTTTGGATGTTGTAAT-- 32481 Query 45171 CTGACGGTTTTAG--AATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 | ||| | | | ||| |||||||| || || || | || | ||||||||| || | Sbjct 32482 CCGACAGCGTGCGGCCATCCTCCAATTGCTTGCCGGCAAAGATGAGTCGTTGCTGATCAG 32541 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 ||||||| || || || ||||| || ||||| || | || | | || || || | Sbjct 32542 GCGGAATACCCTCCTTGTCTTGGATCTTTTGCTTCACATTATCAATTGAATCCGACGATT 32601 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || || | || ||||| || || || || || || |||||||| Sbjct 32602 CAACCTCAAGTGTGATGGTCTTGCCAGTGAGCGTCTTGACGAAGATTTGCAT 32653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002358144040