Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq61 185 1e-41 seq5 116 5e-21 seq15 109 7e-19 seq65 89.7 6e-13 seq33 82.4 9e-11 seq30 82.4 9e-11 >seq61 Length=186913 Score = 185 bits (204), Expect = 1e-41 Identities = 862/1352 (64%), Gaps = 36/1352 (3%) Strand=Plus/Plus Query 115915 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 115974 ||||| ||||| |||||||||||| || | ||||| | |||||||| ||||||||| Sbjct 183698 GTGTAGGGCTCGAAGCACTCATTGAAGCCGAGCATTTGCGACGTGGAGGCGGTGGGCATG 183757 Query 115975 GGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCC 116034 || || | || | |||||||| ||| | | ||| |||||| | | || Sbjct 183758 GGGGCGACAAGCAATGAGTTGCGGACACCGTGCTGGGCGACCTGTTGCTTGAGAGTGGCC 183817 Query 116035 CAGTCGTA--GTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGG 116092 || || | | | || | | | | | ||||||||| |||||| ||| || | || Sbjct 183818 CAATCCCAAAGATCAG--TGGGGGTCACGTTCCACATATCGTACTGGAAGATGCCCTTGG 183875 Query 116093 ACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCG 116152 || | || || ||| | ||||| || ||||| | || ||||||||| | | Sbjct 183876 ACACGGGGCTGCCTTCATAGGTCTCGTAGGGGCCTTGGACGCGCGCCAATTCCATGGATG 183935 Query 116153 CCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGT 116212 ||| | ||| ||||| || || || ||||| || || || | |||||| || | Sbjct 183936 TCTCCATGGCGGCGTGGTAAATGGTTTCAAAGATTTGAATGTTGAGCATCTTGGCTTCCT 183995 Query 116213 CGGAATCAAACGCGAGACGGCACAAA-ATAAATACATCCGCGAGACCTTGGACACCGAGG 116271 | || || || | || | ||| | || || || || || || |||| || | | Sbjct 183996 CCGAGTCGAATG-GATAGCGCATGAGCATGAAGGTGTCAGCCAGGCCCTGGATGCCCAAG 184054 Query 116272 CCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCA---CGGGATAAAAATTC 116328 ||||| ||||| || | | || || ||| ||| ||| | |||| ||| |||| Sbjct 184055 CCAATGGGGCGGTGGCGAAGGTTGGA---TCGCTCGGCCTCAATGACGGGGTAATAATTG 184111 Query 116329 CTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCG 116388 |||||| | | | || | ||| |||| ||||| | | || | || | | Sbjct 184112 ACATCGATGATCTTGTTCAAATTGCGCGTGATCACCTTGACAACCTGGTGCAATTTCTTG 184171 Query 116389 TAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGG----GCGATTGACGCCAG 116444 ||||||| |||| ||||| || || || || || || |||| Sbjct 184172 AAATCAAAC------GTCTTGCGGTTGACG-ACGTATGATGGCAACGCAATGCTGGCCAA 184224 Query 116445 ATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGA 116504 || ||||| | ||||||| | ||| || | ||| ||||| |||||||| Sbjct 184225 GTTGCACACGGCAATCTCATCGGGGCTCGAGTATTCGACAATCTCCGTGCACAAATTGCT 184284 Query 116505 ACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAG 116564 | || |||||||| | ||||| || || || || ||| ||||| |||||||| | Sbjct 184285 GCATTTGATGGTGCCGAGGTTCTGCTGGTTGGATTTGCGGTTGCACGCGTCCTTGTACAA 184344 Query 116565 CATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGG 116623 || | || | |||||||| || |||| || |||||| || | ||| | | | ||| Sbjct 184345 GATGAACGGATTGCCCGTCTCGGTCTGGGCCTCGAGAATCGCGTACCACAACTTTTGCGC 184404 Query 116624 CTGGCACAG-TGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAAC 116682 || | | ||||| || || ||||||| ||||||||| | | |||||| || Sbjct 184405 CTTGATCGTCTGGCGC--GCACGGCCCTCCTTTTCGTACTTTTCAAACAAGGCCTCGAAT 184462 Query 116683 TCTTCACCC-ACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTG 116741 || || ||| ||| |||| | || |||| | || || ||||| ||||| | Sbjct 184463 TCATCGCCCCACA-CCTCGTGCAAATTGGGCGCCTCGTTGGGGCAAAAGAGCGACCAGTC 184521 Query 116742 ACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATC 116801 ||| |||| || ||||||||||| | || || | ||||||||| | || | ||| Sbjct 184522 GCCATTGGCCTCGACACGCTTCATGAACAAATCAGGCACCCAGAGCGCGTAAAACAAATC 184581 Query 116802 CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATC 116861 || ||| || || | ||| || ||||| ||||||||| | || || Sbjct 184582 GCGCGCGCGGATCTCGTCCTTGCCCACGTTCTTGCGCAATTCCAAAAAGGTGAAAATGTC 184641 Query 116862 CGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGACCAGCCTGGTT 116918 |||||||| || || ||||||| || | | ||| ||| || | |||| Sbjct 184642 GGCGTGCCAAGGCTCGAGGTACATGGCAAACGCACCCGGGCGCTTGTTCCCTCCTTGGTC 184701 Query 116919 TACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCC 116978 || || | |||||| ||| || ||||| ||||| || | | ||||| | ||| Sbjct 184702 AACGTAGCGCGCCGTGTTGTTGAACACGCGCAGCATAGGCAACAGACCATTGGCCGTGCC 184761 Query 116979 ATTTGTCCCCCGAA--TACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATA 117036 ||| || || || |||||| | |||| | || | |||||||| || ||||| Sbjct 184762 ATTGGTGCCGGCAATGTACGAGCC--CGTGGCGCGGATGTTGTGGATGTTCAAGCCAATG 184819 Query 117037 CCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATC 117096 || || ||| ||| |||||||| || || | |||| | ||||||| || || ||| Sbjct 184820 CCGCCGGCCGTCTTGGAGATTTGCGCACAGCACTTGAGCGTCTCGTAGATGCCCTCAATC 184879 Query 117097 GAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCG 117156 ||||| |||| | | | | |||||| ||||||||| || | || || || || Sbjct 184880 GAGTCCTCCTTCATAGTCAGCAAGAAGCACGACGACATTTGCGGGCGAGGCGTGCCGGCA 184939 Query 117157 TTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAGGTCTCC 117216 ||||| | || || ||||||| |||| | | | ||||| | ||| |||||| Sbjct 184940 TTGAACAACGTCGGGCTCGCGTGCGTGAAGAATCGCTCCGACATGAGCTGGTACGTCTCC 184999 Query 117217 AAGACAGAGGGAATGTCTTCCCCGTGAATACC 117248 || | | ||||||||| || || ||||| Sbjct 185000 AAAGCGGCATCAATGTCTTCGCCATGGATACC 185031 >seq5 Length=887111 Score = 116 bits (128), Expect = 5e-21 Identities = 260/388 (67%), Gaps = 2/388 (1%) Strand=Plus/Plus Query 10441 TATCAAGCATCTTCCTCGGAGATGTTTGGTAAAGTTAGGGAATCCCCACAAAATGAGGAG 10500 || ||||| || |||| ||| ||| ||| || ||| || | || ||||| ||| Sbjct 16389 TACCAAGCCTCCACCTCTGAGCTGTATGGCAAGGTTGTCGAGACTCCCCAAAAGGAGACC 16448 Query 10501 ACGCCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGT-TGCGGCACATTGGCTCGT 10559 ||||||||||| || || || |||||| || | ||| | | ||| | ||| |||| Sbjct 16449 ACGCCCTTCTACCCTCGCTCGCCCTATGGTGTTGCCAAGCTGTATGGCT-ACTGGATCGT 16507 Query 10560 GAAGAATTATCGCGAATCCTATGGTCTCTTTGTGTGCTCCGGTATTCTCTTCAACCACGA 10619 || || ||||| ||||| | | | |||| || || || || |||||||| Sbjct 16508 CGTCAACTACCGCGAGTCCTACAACATGTACGCGTGCAATGGCATCCTGTTTAACCACGA 16567 Query 10620 GTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAACAAAT 10679 ||| ||||| ||||||| || || || ||||||| | || | || | || Sbjct 16568 GTCTCCCCGCCGTGGCCGCACCTTTGTCACCCGCAAGATCAGCCGTGCTGTCGCCGACAT 16627 Query 10680 CGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGG 10739 | |||| ||| | | | | ||||| ||| | ||||| || | || ||||| Sbjct 16628 CCACTTGGGTCGCCAGGAATGCTTGTATTTGGGCAACATTGACGCCAAGCGCGATTGGGG 16687 Query 10740 ACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTCCAACAAGAAGAGGCGGACGA 10799 |||||||||||||| || || | |||||||||| | ||||| || || ||| | || || Sbjct 16688 CCACGCCAAGGACTACGTCGAGGGCATGTGGCTCATGCTCCAGCAGGACGAGCCCGAAGA 16747 Query 10800 ATATGTCGTCGCGACGGGGGAGACACAC 10827 | |||| | || ||||| ||||| ||| Sbjct 16748 CTTTGTCCTTGCCACGGGCGAGACCCAC 16775 >seq15 Length=628964 Score = 109 bits (120), Expect = 7e-19 Identities = 235/349 (67%), Gaps = 2/349 (1%) Strand=Plus/Plus Query 10486 CCACAAAATGAGGAGACGCCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGT-TGC 10544 || ||||| ||| |||||||| ||||| || || |||||| || | ||| | | Sbjct 137580 CCCCAAAAGGAGACTACGCCCTTTTATCCTCGCTCGCCCTATGGTGTTGCCAAGCTGTAT 137639 Query 10545 GGCACATTGGCTCGTGAAGAATTATCGCGAATCCTATGGTCTCTTTGTGTGCTCCGGTAT 10604 ||| | || |||| ||||| ||||||||||| | | | |||| || || Sbjct 137640 GGCTTCT-GGATCGTCGTCAATTACCGCGAATCCTACAACATGTACGCGTGCAATGGCAT 137698 Query 10605 TCTCTTCAACCACGAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGA 10664 || |||||||||||||| ||||| ||||||| || || || ||||||| | Sbjct 137699 CCTGTTCAACCACGAGTCTCCCCGCCGTGGCCGCACCTTTGTCACCCGCAAGATCAGCCG 137758 Query 10665 TGGTATCAAACAAATCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGC 10724 || | || | ||| |||| ||| | | | | ||||| ||| | |||| Sbjct 137759 TGCTGTCGCCGACATCCACTTGGGTCGCCAGGAATGCTTGTATTTGGGCAACATTGACGC 137818 Query 10725 CGAGAGGGACTGGGGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTCCAACA 10784 | || | || ||||| |||||||||||||| || || | |||||||||| | ||||| || Sbjct 137819 CAAGCGCGATTGGGGCCACGCCAAGGACTACGTCGAGGGCATGTGGCTCATGCTCCAGCA 137878 Query 10785 AGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTC 10833 || ||| | || || | ||| | || ||||| || |||||| | ||| Sbjct 137879 GGACGAGCCCGAAGACTTTGTTCTGGCCACGGGCGAAACACACACTGTC 137927 >seq65 Length=159763 Score = 89.7 bits (98), Expect = 6e-13 Identities = 278/423 (66%), Gaps = 8/423 (2%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | |||||||||||||| ||||||||||| || | ||| ||| |||| Sbjct 95002 TAGATGTTGCTTGTGTATGGCTCAAAACACTCATTGTTGCCGAGGATCTGGCTTGTGCTT 95061 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || |||||||||||||| | ||| || ||||| | ||| | | | ||| Sbjct 95062 GCAGTGGGCATGGGTGCGACGAGGAGCGAATTGCGCACACCGTGTTGCATGACGCGGGTG 95121 Query 116023 TTGAGGGCGTCCCAGTCGTAGTTGAGC-TTTGTCTCCCCCTCCCACATATCAAACTGGAG 116081 |||||||||||| || || || | | || | |||||||| || || |||| Sbjct 95122 CGGAGGGCGTCCCAATCCCAG-CGATCGGAGGGCTTGACATCCCACATGTCGAATTGGAA 95180 Query 116082 GATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAA 116141 || || | | |||||| || |||| | ||| || ||||| | ||| ||| | Sbjct 95181 GACGCCCTTGCTGATTGGCGAGCCTTCAATGGACTCGTAGGGGCCGACCTCCTGCGCAAT 95240 Query 116142 TTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTC-ATTG 116200 || | |||||| | || |||| || || |||||||| ||| ||| |||| Sbjct 95241 GTCACACGACGCCTCCAACGCACCGTGGTAGATGGTCTCAAAGATGTCCTTGTTCAATTG 95300 Query 116201 CCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTT 116260 | |||||| || ||||| | || || || | ||| |||| || || |||| Sbjct 95301 AC-GCGCCTCGGGCGAGTCAAATGGCAGGCGAAGCAGCAAAAACGCATCGGCCAGGCCTT 95359 Query 116261 GGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGT--CTCCACGGG 116318 | || || || || | || ||||| | ||| || ||| | ||| | |||||| || Sbjct 95360 GCACGCCAAGACCCACGGGACGATGGCGCATGTT--GCTTCGGCGCGCTTCCTCCACAGG 95417 Query 116319 ATA 116321 ||| Sbjct 95418 ATA 95420 >seq33 Length=455653 Score = 82.4 bits (90), Expect = 9e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| | ||||||||||||| | || || || || ||||| || || Sbjct 391083 GCAAAGTCCGTGTGCAAACCCTCGTCACGGCAAATCAGCTCGTTGGAGAACGTCAAGCCA 391142 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| | || |||||||| | ||| || || | ||| | ||||||||||| || Sbjct 391143 GGCATCAAGCCGCGCTTCTTGAGCCAAAAGATGGACGCAAACGCACCAGAGAAGAAAATG 391202 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAA 127677 ||||| || ||| || |||| || ||||||||||| Sbjct 391203 CCCTCAACCGCCGCAAAAGCAACAAGGCGCTCGGCAAA 391240 >seq30 Length=460931 Score = 82.4 bits (90), Expect = 9e-11 Identities = 213/319 (67%), Gaps = 7/319 (2%) Strand=Plus/Minus Query 12792 AAGCCATCCATCTCAGTCAAG-AGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGG 12850 ||||| |||||||| | | || || || |||| ||| ||| |||||||| || || Sbjct 126271 AAGCCGTCCATCTC-GACGAGCAGCTGGTTGAGGGTGCTTTCGCGTTCATCGTTGCCGCC 126213 Query 12851 CAT---ACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGAT 12907 ||| ||||||| | || ||| || | |||||| |||||||| | || | ||| Sbjct 126212 CATCTGACCACCCTTGCCACGGGCCTTGCCAATGGCGTCGATTTCGTCGACAAAGATGAT 126153 Query 12908 ACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 12967 ||| || ||||| |||| | || | ||| || || | | || ||||||||| Sbjct 126152 ACAGGGAGCATTTTTCTTGGCATTGGCGAACAAATCGCGGACACGCGAGGGACCGACACC 126093 Query 12968 CACAAACATCTCCACAAAATTGGCGGCGGA-ACATTGGATGAAGGGGACGTTGGATTCAC 13026 ||||||||||| ||||| | || | || || | || |||||| || || |||| Sbjct 126092 GACAAACATCTCGACAAACTCGGAACCTGACACGCT-GAAGAAGGGCACACCGGCCTCAC 126034 Query 13027 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCAC 13086 | ||| | || ||| | || ||||| || || ||||| || | || | ||||| Sbjct 126033 CGGCGGTCGCCTTGGCCAACAGAGTCTTACCGGTACCTGGAGGACCGGAAAGGATGGCAC 125974 Query 13087 CACGTGGGATCCTGGCACC 13105 | || || || |||| || Sbjct 125973 CGCGAGGAATGGTGGCGCC 125955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506057342840