Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq33 131 3e-25 seq61 127 3e-24 seq65 123 4e-23 >seq33 Length=455653 Score = 131 bits (144), Expect = 3e-25 Identities = 300/447 (67%), Gaps = 11/447 (2%) Strand=Plus/Plus Query 159641 GACACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCG 159700 || ||| |||||| || || ||||||||||||| | || || ||||| || | Sbjct 390801 GAGACACGCTTCTCAAAGAAATTGGTCTTGCCCTGGAGCGAGATGAGGTCCATAAAGTCA 390860 Query 159701 AATGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCC 159760 || || || | | | ||| |||| || ||||| | |||| | ||| || Sbjct 390861 AAGGGATTGGTTGCCTTGTAGTGCTTGTCCTGGCCAAGAGCAACGAGCAGGCGGTCCGCA 390920 Query 159761 ACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGC 159820 |||||||| ||||| ||||| ||| |||| || || | ||| || || ||| Sbjct 390921 ACAAATTCAATGTATTGGCACATGAGCTTGGAGTTCATGCCAATGAGCGCGACAGGCAGC 390980 Query 159821 GCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAG-ACACG 159879 || || | ||| || || | |||||||| ||| || ||||| | || | || | ||||| Sbjct 390981 GCGTCGGTCAGGAATTCTTGCTCAATCTTGACGGCCTCGGTGATGATAT-CGCGCACACG 391039 Query 159880 TTCGTACCCCGGC---TTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCA 159936 || | ||| |||| || | ||| | ||| || |||||||||||||| Sbjct 391040 GTCATTGGAAGGCGTGTTGCGCAGA---TGGCC---AAAGAGCAGGCACGCAAAGTCCGT 391093 Query 159937 GTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCC 159996 ||||| |||||||| || | || | ||||||||| | | | ||| ||||| | || Sbjct 391094 GTGCAAACCCTCGTCACGGCAAATCAGCTCGTTGGAGAACGTCAAGCCAGGCATCAAGCC 391153 Query 159997 ACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGC 160056 ||| ||||||||||| |||| |||||| ||||| || || || ||||| || || Sbjct 391154 GCGCTTCTTGAGCCAAAAGATGGACGCAAACGCACCAGAGAAGAAAATGCCCTCAACCGC 391213 Query 160057 CGCAAACGCCACGAGCCTCTCACCAAA 160083 |||||| || || || | ||| |||| Sbjct 391214 CGCAAAAGCAACAAGGCGCTCGGCAAA 391240 Score = 89.7 bits (98), Expect = 8e-13 Identities = 143/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 116088 CGTTTATCGTGTCTGTTTTACCAAAGATC-TGCAGACATGGGGTTGGGCGTACCCTTTAA 116146 || || ||||| || ||||||| | || ||| |||||||| ||||||| || || || Sbjct 101920 CGCTTGTCGTGCGTGCTTTACCAGCGGTCGTGC-GACATGGGCCTGGGCGTGCCATTCAA 101862 Query 116147 CGTTGCGAGCTACGCGCTACTGACTCATATTATGGCACATTTGGCGGACCTGGAAGTCGG 116206 ||||| |||||| | ||||| | || || || ||| | ||||||||||| ||| Sbjct 101861 TATTGCGTCGTACGCGTTGCTGACGCGCATGATTGCGCATGTCACGGACCTGGAACCCGG 101802 Query 116207 AGAATTGATACACTCTATTGGGGACGCGCACATCTACACCAACCATGT-GGCGCAGCTCG 116265 ||||| || ||| | || || ||| ||||| |||| | ||||| | | |||| ||| Sbjct 101801 CGAATTCATCCACACCATGGGCGACACGCACGTCTATGTCGACCATCTCGACGCA-CTCA 101743 Query 116266 AGCTGCAGGTGAAGCGGGAG 116285 || | ||| | |||| ||| Sbjct 101742 AGGTCCAGCTCCAGCGCGAG 101723 >seq61 Length=186913 Score = 127 bits (140), Expect = 3e-24 Identities = 380/581 (65%), Gaps = 14/581 (2%) Strand=Plus/Plus Query 205186 CCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTTTTCAA 205245 ||| || ||||||||| ||| || || | || |||| | || | |||||| ||| Sbjct 184561 CCAGAGCGCGTAAAACAAATCGCGCGCGCGGATCTCGTCCTTGCCCACGTTCTTGCGCAA 184620 Query 205246 GTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCTGG 205305 |||| | | ||||||||||||||| ||||| | ||| ||| | || || || Sbjct 184621 TTCCAAAAAGGTGAAAATGTCGGCGTGCCAAGGCTCGAGGTACATGGCAAACGCACCCGG 184680 Query 205306 CCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCATCGG 205365 | ||||||||| || ||||| || ||| | | | |||||| || |||||||| || Sbjct 184681 GCGCTTGTTCCCTCCTTGGTCAACGTAGCGCGCCGTGTTGTTGAACACGCGCAGCATAGG 184740 Query 205366 CACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCCTCACGTT 205425 || |||||| ||||| || || || |||| | ||| |||||| || | | ||| Sbjct 184741 CAACAGACCATTGGCCGTGCCATTGGTGCCGGCAATGTACGAGCCCGTGGCGCGGATGTT 184800 Query 205426 GGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCA-CTCTTGCAGAG 205484 | |||| | |||||| ||||| | ||||| ||| || || || | |||| || | Sbjct 184801 GTGGATGTTCAAGCCAATGCCGCCGGCCGTCTTGGAGATTTGCGCACAGCACTTG-AGCG 184859 Query 205485 TGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCACGAAGCCAGCT 205544 | ||||||||| | || || || ||| || |||| || ||||||| | || | Sbjct 184860 TCTCGTAGATGCCCTCAATCGAGTCCTCCTTCATAGTCAGCAAGAAGCACGACGACATTT 184919 Query 205545 --TGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAGCGCTTCTC 205602 ||| | | ||||| || | ||| | ||| ||||| ||||| ||||| || Sbjct 184920 GCGGGCGAGG--CGTGCCGGCATTGAACAACGTCGGGCTCGCGTGCGTGAAG----AATC 184973 Query 205603 GCTCAAACA----CCTGTAGGTCTCCAGCACGCTCTCCAGATCGAAGCCGTGAATACCTA 205658 |||| ||| | ||| ||||||| || || | || ||| || ||||| | Sbjct 184974 GCTCCGACATGAGCTGGTACGTCTCCAAAGCGGCATCAATGTCTTCGCCATGGATACCAA 185033 Query 205659 TGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACCCTCTCGTTCACCTTGAGCA 205718 || | | ||||| | || || || | |||| |||| | | || | |||||||| Sbjct 185034 CAGCCACACGCATGATCAAATGCTGCGGACGCTCCGCCACCTTGCCATTGATCTTGAGCA 185093 Query 205719 GATAGGCTCTCTCTAGGGTGCGGATGGCAAAAAAGTTGAAG 205759 ||| | | ||| || || || ||||| ||||| || Sbjct 185094 AATATGAACGCTCGAGCGTCTTGAAACCAAAATAGTTGTAG 185134 Score = 95.1 bits (104), Expect = 2e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCC 203898 || ||| || ||||||| ||||||| ||||| || | | | || |||||||||||| Sbjct 183127 CTGGTCAACGGTGAACTTGATGGCGTCGACGGCGGGACGCGTGCGCAAATAGTACATGCC 183186 Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGG 203958 |||||| |||||||| | ||| ||||| | |||||||| | ||| |||| | |||||| Sbjct 183187 GGTCTTGAGGCCCTTTTTCCAGCCGTAGAAATGCATGGACGTCAGCTTGCCAAAGTTGGG 183246 Query 203959 GTCGGCCATG 203968 |||| ||| Sbjct 183247 CACGGCAATG 183256 >seq65 Length=159763 Score = 123 bits (136), Expect = 4e-23 Identities = 164/225 (73%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 203842 GTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGT 203901 ||| || ||||||| ||||||| ||||| || | | | ||| ||||||||||| || Sbjct 94372 GTCGACGGTGAACTTGATGGCGTCGACGGCGGGGCGGGAGCGCAGGTAGTACATGCCCGT 94431 Query 203902 CTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTC 203961 ||| |||||||| | ||| | || | ||||||||| | || |||| ||| ||||||| Sbjct 94432 CTTGAGGCCCTTTTTCCAGGCATAAAAGTGCATGGACGTGAGCTTGCCAACGGTGGGGTC 94491 Query 203962 GGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCA 204020 | || | ||||| || || || ||||| ||| || ||||| || || || |||| Sbjct 94492 GCTGCTGAACAGGTTCATGGATTGACTCTGGTCAATG-AACGCGCCGCGGTCCGCAGCCA 94550 Query 204021 TATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA 204065 | | ||| || |||||| |||||||||||||||||| ||| Sbjct 94551 TGTCGATGATCACGCGCTGCGAGATCTCCCACACCGTCTTGTACA 94595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795153719023440