Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq45 138 3e-27 seq30 134 3e-26 seq94 116 9e-21 seq56 109 1e-18 seq1 107 5e-18 >seq45 Length=303593 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||| || || |||||||||| ||||||||||| | || | ||||| Sbjct 86867 AGGACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGCGTGCGGCCATCC 86808 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| |||||||| ||||| ||||||||||| ||| || ||||| || Sbjct 86807 TCGAGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCT 86748 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||||||||| || |||| || || | | || || ||||| ||||| ||| Sbjct 86747 TGGATCTTTTGCTTGACATTGTCGATGGAATCGGACGACTCCACCTCCAAGGTGATGGTC 86688 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || ||||| || Sbjct 86687 TTGCCAGTGAGCGTCTTGACGAAAATCTG 86659 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| | || || ||||| |||| |||||| |||| ||| || | || ||| Sbjct 87323 AGGACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAATCAGACAAGGTGCGGCCGTCT 87264 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||||| ||||| |||||||| ||||||||||| || ||| ||||| || Sbjct 87263 TCCAATTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCT 87204 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||||||||| || |||| || ||| | | ||| || ||||| ||||| ||| Sbjct 87203 TGGATCTTTTGCTTGACATTGTCGATGGAGTCGGACGATTCGACCTCCAAAGTGATGGTC 87144 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || ||||| || || Sbjct 87143 TTGCCGGTCAAGGTCTTGACAAAGATCTG 87115 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | ||| ||||| ||||||||||||| ||||||||||| || || Sbjct 86648 CGGAGACGCAGAACCAAGTGCAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAGCGTG 86589 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| ||||| || || | ||||||||| || || ||| || Sbjct 86588 CGGCCGTCCTCCAGCTGCTTGCCGGCAAAAATCAAACGCTGCTGATCGGGGGGAATGCCC 86529 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || || || ||||| ||| |||| | || | | || || |||| Sbjct 86528 TCCTTGTCTTGGATTTTCTGCTTGACGTTGTCGATAGAATCGGACGACTCGACCTCCAGA 86469 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || |||||||| || || |||||||| Sbjct 86468 GTGATGGTCTTGCCAGTGAGAGTCTTGACGAAAATTTG 86431 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||| || || |||||||||| ||||||||| | | || | || ||| Sbjct 87551 AGGACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGCGTGCGGCCGTCT 87492 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| || || ||||| |||||||| ||||| ||||| ||| || ||||| || Sbjct 87491 TCCAATTGTTTGCCGGCAAAGATGAGGCGCTGTTGGTCGGGAGGGATGCCTTCCTTGTCT 87432 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||||||||| || |||| || || | | ||| || ||||| ||||| ||| Sbjct 87431 TGGATCTTTTGCTTGACATTGTCGATGGAATCGGACGATTCGACCTCCAAAGTGATGGTC 87372 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || ||||| || || Sbjct 87371 TTGCCGGTCAAGGTCTTGACAAAGATCTG 87343 Score = 107 bits (118), Expect = 5e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| || || |||||||| | ||||||||||| | || | ||||| Sbjct 87095 AGAACCAAGTGGAGCGTGGATTCCTTTTGAATGTTGTAGTCAGAGAGCGTGCGGCCATCC 87036 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||||| |||||||| || | |||||||||||| ||| || ||||| || Sbjct 87035 TCCAATTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCT 86976 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||| || ||||| || || | || ||| | | || || || | ||||| ||| Sbjct 86975 TGAATTTTCTGCTTGACATTGTCAATGGAGTCGGACGACTCCACCTCGAGTGTGATGGTC 86916 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || ||||| Sbjct 86915 TTGCCAGTGAGCGTCTTGACGAAGATTTG 86887 >seq30 Length=460931 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||| || || |||||||||| |||||| |||| ||| || | |||||| Sbjct 195989 AGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAATCAGACAAGGTGCGGCCATCT 196048 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||||| ||||| |||||||| ||||||||||| ||| || ||||| ||| Sbjct 196049 TCCAATTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCC 196108 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||||||||| || || | || || | | || || || | |||||| ||| Sbjct 196109 TGGATCTTTTGCTTGACATTATCAATGGAATCCGACGACTCGACCTCGAGCGTGATGGTC 196168 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||| || ||||| || || Sbjct 196169 TTGCCAGTCAAAGTCTTAACAAAGATCTG 196197 Score = 131 bits (144), Expect = 4e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || ||||||||||| | ||||||||||| | || | || ||||||| ||| Sbjct 195770 TGCAGCGTGGACTCCTTTTGAATGTTGTAGTCAGAGAGCGTGCGGCCGTCTTCCAATTGC 195829 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || |||||||| ||||| ||||||||||| || ||| ||||| || ||||||||| Sbjct 195830 TTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGAATCTTT 195889 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||||| || |||| | || | | ||| || ||||| ||||| ||||| || ||| Sbjct 195890 TGCTTGACATTGTCGATCGAATCGGACGATTCGACTTCCAAAGTGATGGTCTTGCCAGTG 195949 Query 199607 AGAGTTTTCACAAAAATTTG 199626 || || || ||||| ||||| Sbjct 195950 AGCGTCTTGACAAAGATTTG 195969 Score = 129 bits (142), Expect = 1e-24 Identities = 145/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || ||||||||||||| ||||||||||| || || | ||||| || |||||||| ||| Sbjct 196232 GTGGACTCCTTTTGGATGTTGTAGTCAGACAGCGTGCGGCCATCCTCGAGCTGCTTGCCG 196291 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 || ||||| || ||||||||||| || ||| || || || |||||||||||||| Sbjct 196292 GCAAAGATAAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCTTGAATCTTTTGCTTG 196351 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || || | | ||| | | || || |||| ||||| ||||| || |||||||| Sbjct 196352 ACATTGTCAATAGAGTCCGACGACTCGACCTCCAGAGTGATGGTCTTGCCAGTGAGAGTC 196411 Query 199613 TTCACAAAAATTTG 199626 || || |||||||| Sbjct 196412 TTGACGAAAATTTG 196425 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| | |||||| || || |||||||||| ||||||||| | || || Sbjct 195524 CGGAGACGCAGGACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCGGACAGCGTG 195583 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| ||||| ||||| || ||||||||||| ||| || ||| Sbjct 195584 CGGCCATCCTCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCGGGAGGGATACCT 195643 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||||||||| || |||| || || | | || || || | Sbjct 195644 TCCTTGTCCTGGATCTTTTGCTTGACATTGTCGATGGAATCCGACGACTCGACCTCGAGG 195703 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | ||| || ||||| || || Sbjct 195704 GTGATGGTCTTGCCAGTCAAAGTCTTGACAAAGATCTG 195741 >seq94 Length=66050 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||||||||| |||||||||| ||||||||||| ||| || | |||||| Sbjct 22814 AGGACCAAGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCAGACAACGTGCGGCCATCT 22873 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||||| ||||||||||| | ||||||||||| || || || || || Sbjct 22874 TCCAATTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCT 22933 Query 199538 TGAATCTTTTGCTTCAC 199554 || ||||||||||| || Sbjct 22934 TGGATCTTTTGCTTGAC 22950 >seq56 Length=224513 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 || ||| || ||||| | |||||||||||||||| |||||| || | || || | || Sbjct 32438 TCGCAGCACCAGGTGCAACGTCGACTCCTTTTGGATGTTGTAATCCGACAGCGTGCGGCC 32497 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||| |||| ||||| ||||| |||||||| || ||||| || || ||| || || Sbjct 32498 ATCCTCCAATTGCTTGCCGGCAAAGATGAGTCGTTGCTGATCAGGCGGAATACCCTCCTT 32557 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || || |||||||||||||| || | | || | | ||| || || | ||||| Sbjct 32558 GTCTTGGATCTTTTGCTTCACATTATCAATTGAATCCGACGATTCAACCTCAAGTGTGAT 32617 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| || || || || ||||| Sbjct 32618 GGTCTTGCCAGTGAGCGTCTTGACGAAGATTTG 32650 >seq1 Length=1252801 Score = 107 bits (118), Expect = 5e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||| || |||||||| |||| ||||||||| | ||| || | || ||| Sbjct 333521 AGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCGTCT 333580 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| || |||||||| | ||||||||||| || ||| ||||| || Sbjct 333581 TCCAACTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATACCTTCCTTGTCT 333640 Query 199538 TGAATCTTTTGCTTCAC 199554 || ||||||||||| || Sbjct 333641 TGGATCTTTTGCTTGAC 333657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178919349364983