Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq45 141 1e-28 seq30 141 1e-28 seq56 116 4e-21 seq1 102 9e-17 seq94 100 3e-16 >seq45 Length=303593 Score = 141 bits (156), Expect = 1e-28 Identities = 163/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||| |||| || |||||||||||| |||||||| || || ||||| | Sbjct 86643 ACGCAGAACCAAGTGCAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAGCGTGCGGCC 86584 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || |||||||||||||| || ||||| |||||||| |||| || | || |||||| Sbjct 86583 GTCCTCCAGCTGCTTGCCGGCAAAAATCAAACGCTGCTGATCGGGGGGAATGCCCTCCTT 86524 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 ||| ||| |||| ||||| ||| | | | | ||| ||| || || |||| |||| Sbjct 86523 GTCTTGGATTTTCTGCTTGA-CGTTGTCGATAGAATCGGACGACTCGACCTCCAGAGTGA 86465 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| || || || || || || |||||||| Sbjct 86464 TGGTCTTGCCAGTGAGAGTCTTGACGAAAATTTGCAT 86428 Score = 132 bits (146), Expect = 5e-26 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| |||||||| || || ||||| | || |||||||||||||||||||| Sbjct 86846 TCCTTTTGGATGTTGTAGTCAGAGAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAA 86787 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | |||||||||||| | || | || |||||||| |||||| | ||||| | Sbjct 86786 ATGAGGCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTG 86727 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | | ||| ||| ||||| |||| |||||||| ||||| || ||||| || || Sbjct 86726 TCGATGGAATCGGACGACTCCACCTCCAAGGTGATGGTCTTGCCAGTGAGCGTCTTGACG 86667 Query 46583 AAGATTTGCAT 46593 || || ||||| Sbjct 86666 AAAATCTGCAT 86656 Score = 123 bits (136), Expect = 3e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 |||||||| || |||||||| || || ||||| | || || | |||||||||||||| Sbjct 87074 TCCTTTTGAATGTTGTAGTCAGAGAGCGTGCGGCCATCCTCCAATTGCTTGCCGGCGAAA 87015 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| ||||||||||| | || | || |||||||| || |||| ||||| | Sbjct 87014 ATCAAACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGAATTTTCTGCTTGACATTG 86955 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | | |||| ||| ||||| || | |||||||| ||||| || ||||| || || Sbjct 86954 TCAATGGAGTCGGACGACTCCACCTCGAGTGTGATGGTCTTGCCAGTGAGCGTCTTGACG 86895 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 86894 AAGATTTGCAT 86884 Score = 123 bits (136), Expect = 3e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| ||||||||||| || ||||| |||| || | || |||||||| || Sbjct 87530 TCCTTTTGGATGTTGTAGTCGGAAAGCGTGCGGCCGTCTTCCAATTGTTTGCCGGCAAAG 87471 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | |||||| ||||||| || | || |||||||| |||||| | ||||| | Sbjct 87470 ATGAGGCGCTGTTGGTCGGGAGGGATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTG 87411 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | | ||| |||||| || |||| |||||||| ||||| |||| || || ||| Sbjct 87410 TCGATGGAATCGGACGATTCGACCTCCAAAGTGATGGTCTTGCCGGTCAAGGTCTTGACA 87351 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 87350 AAGATCTGCAT 87340 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||||| || ||||| ||||| ||||| || || | ||||| |||| || Sbjct 87320 ACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAATCAGACAAGGTGCGGCCGTCTTCC 87261 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 | ||||||||||| || || | |||||||||||||| || | || |||||||| | Sbjct 87260 AATTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCTTGG 87201 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| | ||||| | | | | |||| |||||| || |||| |||||||| ||| Sbjct 87200 ATCTTTTGCTTGACATTGTCGATGGAGTCGGACGATTCGACCTCCAAAGTGATGGTCTTG 87141 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| || || |||||||| ||||| Sbjct 87140 CCGGTCAAGGTCTTGACAAAGATCTGCAT 87112 >seq30 Length=460931 Score = 141 bits (156), Expect = 1e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| ||||| || ||||||||| || |||||||| || || ||||| | Sbjct 195757 ACGGAGCACCAAATGCAGCGTGGACTCCTTTTGAATGTTGTAGTCAGAGAGCGTGCGGCC 195816 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || | |||||||||||||| || | |||||||||||| | || | || ||||| Sbjct 195817 GTCTTCCAATTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTT 195876 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| ||||| | ||||| | | | || ||| |||||| || |||| ||||| Sbjct 195877 GTCTTGAATCTTTTGCTTGACATTGTCGATCGAATCGGACGATTCGACTTCCAAAGTGAT 195936 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| || ||||| || |||||||||||||| Sbjct 195937 GGTCTTGCCAGTGAGCGTCTTGACAAAGATTTGCAT 195972 Score = 136 bits (150), Expect = 4e-27 Identities = 162/220 (74%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| ||||| || |||||||||||| |||||||| || || ||||| | Sbjct 196213 ACGGAGCACCAAGTGCAACGTGGACTCCTTTTGGATGTTGTAGTCAGACAGCGTGCGGCC 196272 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || ||||||||||||||||| || || | |||||||||||||| || | | |||||| Sbjct 196273 ATCCTCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCGGGGGGAATACCCTCCTT 196332 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| ||||| | ||||| | | | | ||| ||| || || |||| ||||| Sbjct 196333 GTCTTGAATCTTTTGCTTGACATTGTCAATAGAGTCCGACGACTCGACCTCCAGAGTGAT 196392 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 ||| ||||| || || || || || || |||||||| ||| Sbjct 196393 GGTCTTGCCAGTGAGAGTCTTGACGAAAATTTGCATGTTG 196432 Score = 131 bits (144), Expect = 2e-25 Identities = 170/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 46359 ATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGT 46418 |||||| ||| || | | ||||| |||| || | || ||||||||||| |||| Sbjct 195510 ATTATTGGCCACCGCGGAGACGCAGGACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGT 195569 Query 46419 AGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGT 46478 ||||||| || ||||| | || ||||||||||||||||| || || | ||||||||||| Sbjct 195570 AGTCGGACAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGT 195629 Query 46479 CGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCG 46538 ||| || | | ||||||||| |||||| | ||||| | | | | || || Sbjct 195630 CGGGAGGGATACCTTCCTTGTCCTGGATCTTTTGCTTGACATTGTCGATGGAATCCGACG 195689 Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || || || | |||||||| ||||| |||| || || |||||||| ||||| Sbjct 195690 ACTCGACCTCGAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 195744 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| ||||| || || | ||||| | || || | ||||||||||| || Sbjct 196010 TCCTTTTGGATGTTGTAATCAGACAAGGTGCGGCCATCTTCCAATTGCTTGCCGGCAAAG 196069 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | |||||||||||||| || | || ||||||||| |||||| | ||||| | Sbjct 196070 ATGAGGCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTGACATTA 196129 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | | || ||| || || || | ||||||||| ||||| |||| || |||||| Sbjct 196130 TCAATGGAATCCGACGACTCGACCTCGAGCGTGATGGTCTTGCCAGTCAAAGTCTTAACA 196189 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 196190 AAGATCTGCAT 196200 >seq56 Length=224513 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | || |||| |||||| ||||| || |||||||||||| ||||| || | Sbjct 32425 TGCCGCCGCGCAATCGCAGCACCAGGTGCAACGTCGACTCCTTTTGGATGTTGTAATCCG 32484 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || | ||||||||||| || || | || ||||| || | || Sbjct 32485 ACAGCGTGCGGCCATCCTCCAATTGCTTGCCGGCAAAGATGAGTCGTTGCTGATCAGGCG 32544 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | ||||||||| |||||| | ||| | | | | | || |||||| | Sbjct 32545 GAATACCCTCCTTGTCTTGGATCTTTTGCTTCACATTATCAATTGAATCCGACGATTCAA 32604 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||| ||||| || ||||| || || ||||||||||| Sbjct 32605 CCTCAAGTGTGATGGTCTTGCCAGTGAGCGTCTTGACGAAGATTTGCAT 32653 >seq1 Length=1252801 Score = 102 bits (112), Expect = 9e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| | ||||| |||| || | ||||||||| ||||| Sbjct 333541 CTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCGTCTTCCAACTGCTTGCCAGCGAA 333600 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 ||||||||||||||||||| || | | |||||||| |||||| | ||||| Sbjct 333601 GATCAAGCGCTGCTGGTCGGGGGGAATACCTTCCTTGTCTTGGATCTTTTGCTTGA 333656 >seq94 Length=66050 Score = 100 bits (110), Expect = 3e-16 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| |||||||| || | ||||| | || || | |||||||||||||| Sbjct 22835 TCCTTTTGGATGTTGTAGTCAGACAACGTGCGGCCATCTTCCAATTGCTTGCCGGCGAAG 22894 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 ||||||||||||||||| | || | || ||||||||| |||||| | ||||| Sbjct 22895 ATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATCTTTTGCTTGA 22949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565237347243480