Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq33 219 4e-52 seq45 141 9e-29 seq30 138 1e-27 seq56 116 4e-21 seq1 98.7 1e-15 seq94 89.7 5e-13 >seq33 Length=455653 Score = 219 bits (242), Expect = 4e-52 Identities = 341/479 (71%), Gaps = 9/479 (2%) Strand=Plus/Plus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 |||||||| ||||| || || |||| | || ||||| |||||| || ||||| ||| Sbjct 390810 TTCTCAAAGAAATTGGTCTTGCCCTGGAGCGAGATGAGGTCCATAAAGTCAAAGGGATTG 390869 Query 132685 GCTGTGTTGTAGTGCTTGGTGCCGATCAGGT-CGACGAGCAGCCTGTCGGCCACGAACTC 132743 | || |||||||||||| | | | || | | |||||||| | ||| || || || || Sbjct 390870 GTTGCCTTGTAGTGCTTG-TCCTGGCCAAGAGCAACGAGCAGGCGGTCCGCAACAAATTC 390928 Query 132744 GATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGC-ACCGGCAGCGCTTCGG 132802 |||||||| ||||| | | | || | || | || ||| || |||||||| |||| Sbjct 390929 AATGTATTGGCACATGAGCTTGGAGTTCATGCCAATGAG-CGCGACAGGCAGCGCGTCGG 390987 Query 132803 TGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGC 132862 | || || |||||| || ||| || ||||||| ||| || | || || | | Sbjct 390988 TCAGGAATTCTTGCTCAATCTTGACGGCCTCGGTGATGATATCGCGCACACGGTCATTGG 391047 Query 132863 TCGGCC-GTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCG 132921 ||| ||||| | | ||| || | || ||| |||||||| ||||| |||||| Sbjct 391048 AAGGCGTGTTGCGC-AGATGGCCAAAGAGCAGGCACGCAAAGTCCGTGTGCAAACCCTCG 391106 Query 132922 TCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGC 132981 || | | |||| || |||||| ||| |||||||| ||||| | |||||| || |||||| Sbjct 391107 TCACGGCAAATCAGCTCGTTGGAGAACGTCAAGCCAGGCATCAAGCCGCGCTTCTTGAGC 391166 Query 132982 CAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACC 133041 ||||| |||| || || || || ||||| | |||||| || ||||| ||||| || Sbjct 391167 CAAAAGATGGACGCAAACGCACCAGAGAAGAAAATGCCCTCAACCGCCGCAAAAGCAACA 391226 Query 133042 AGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100 ||||||||| | |||||| | ||||| | ||||||||| | ||||| |||||||| Sbjct 391227 AGGCGCTCGGCAAACGTG---TTGTTGCTCGAGATCCAGCGGAATGCCCAGTCGGCCTT 391282 Score = 102 bits (112), Expect = 8e-17 Identities = 170/245 (69%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 133195 TCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACC 133254 || ||||| | ||||| || |||||| ||||| ||||||||| |||||| | | | Sbjct 391448 TCGGAGTGGATATTCTCAATCATGATTTGGAAGCCATAAAAGCACTTTGCCTCGGCAATC 391507 Query 133255 TGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCG 133314 | || || | ||| | |||| || |||||||| ||||| || | || Sbjct 391508 TTGACCTCGTCCATGAAGTTTTGCACCAAGTTCTCGTTGACAATGCCATCCGAGCTTGCA 391567 Query 133315 AAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAA---GCGCTCCCAG 133371 || || ||||| | |||| ||||| | |||||||| | ||| | ||||||| Sbjct 391568 AAGAACGCCAGAATGTGCGAAATGAAGTAGCGCTCGTCAGCAGTCATCTTGTTCTCCCAG 391627 Query 133372 TCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTT 133431 || | |||||||||||| || | ||||||| | |||||||| |||||||| || ||| Sbjct 391628 TCACCAAGGTCCTTGGACAGATCAATCTCCTCGGCCGTCCAAAAGGACGCCTCTGCCTTT 391687 Query 133432 TTGTA 133436 ||||| Sbjct 391688 TTGTA 391692 >seq45 Length=303593 Score = 141 bits (156), Expect = 9e-29 Identities = 163/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| ||||| |||||||| | || |||||| | || Sbjct 86428 ATGCAAATTTTCGTCAAGACTCTCACTGGCAAGACCATCACTCTGGAGGTCGAGTCGTCC 86487 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | |||| | || | ||||||| ||||| ||||| |||||| |||| || Sbjct 86488 GATTCTATCGACAACG-TCAAGCAGAAAATCCAAGACAAGGAGGGCATTCCCCCCGATCA 86546 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | |||| || ||||| |||||||| |||| ||||| || |||||||| Sbjct 86547 GCAGCGTTTGATTTTTGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGTCTGACTACAA 86606 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || ||||| ||||| |||||| Sbjct 86607 CATCCAAAAGGAGTCCACTCTGCACTTGGTTCTGCGT 86643 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || |||||||| ||||| ||||||||| | || || ||| | || Sbjct 86656 ATGCAGATTTTCGTCAAGACGCTCACTGGCAAGACCATCACCTTGGAGGTGGAGTCGTCC 86715 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | || |||| |||| ||||| || || || || | ||||| Sbjct 86716 GATTCCATCGACAATGTCAAGCAAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAG 86775 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||||| ||| ||||| ||||| || || | ||||| ||| ||||||||| Sbjct 86776 CAGCGCCTCATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCTCTGACTACAAC 86835 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||||| | ||||| || ||||| || ||| || | || ||| Sbjct 86836 ATCCAAAAGGAATCCACGCTCCACTTGGTCCTCCGTCTGCGCGGTGGC 86883 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || |||||||| ||||| |||||||| |||| || ||| | || Sbjct 86884 ATGCAAATCTTCGTCAAGACGCTCACTGGCAAGACCATCACACTCGAGGTGGAGTCGTCC 86943 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| | | | | | || | ||||| | ||||| || || || || | ||||| Sbjct 86944 GACTCCATTGACAATGTCAAGCAGAAAATTCAAGACAAGGAAGGCATCCCTCCTGACCAG 87003 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | |||| ||| ||||| || |||| || | ||||| ||| ||||||||| Sbjct 87004 CAGCGTTTGATTTTCGCCGGCAAGCAATTGGAGGATGGCCGCACGCTCTCTGACTACAAC 87063 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || ||||||||| | ||||| || ||||| || || || | || ||| Sbjct 87064 ATTCAAAAGGAATCCACGCTCCACTTGGTTCTCCGCCTGCGCGGTGGC 87111 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || ||||| |||||||| | || ||||| | || Sbjct 87340 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACTTTGGAGGTCGAATCGTCC 87399 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | || |||| |||| ||||| || || || || |||||||| Sbjct 87400 GATTCCATCGACAATGTCAAGCAAAAGATCCAAGACAAGGAAGGCATCCCTCCCGACCAA 87459 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | || |||||||| |||| |||| ||||| || |||||||||| Sbjct 87460 CAGCGCCTCATCTTTGCCGGCAAACAATTGGAAGACGGCCGCACGCTTTCCGACTACAAC 87519 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||||| | ||||| || ||||| || ||| | | |||||| Sbjct 87520 ATCCAAAAGGAATCCACGCTCCACTTGGTCCTCCGTCTCCGTGGCGGC 87567 Score = 105 bits (116), Expect = 7e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || ||||| |||||||| | || ||||| | || Sbjct 87112 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACTTTGGAGGTCGAATCGTCC 87171 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| | | | | | || |||| |||| ||||| || || |||||| ||||||| Sbjct 87172 GACTCCATCGACAATGTCAAGCAAAAGATCCAAGACAAGGAAGGCATTCCCCCCGACCAG 87231 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | || ||||| || |||| |||| |||||| | || |||||| Sbjct 87232 CAGCGCCTCATCTTTGCCGGCAAGCAATTGGAAGACGGCCGCACCTTGTCTGATTACAAC 87291 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| |||||| | || |||| ||||| || ||| Sbjct 87292 ATCCAGAAGGAATCCACCTTGCACTTGGTCCTCCGT 87327 >seq30 Length=460931 Score = 138 bits (152), Expect = 1e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || |||||||| ||||| |||||||| | || ||||| | || Sbjct 195972 ATGCAAATCTTTGTCAAGACGCTCACTGGCAAGACCATCACTTTGGAAGTCGAATCGTCC 195913 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | || |||| || | ||||| || || |||||| | ||||| Sbjct 195912 GATTCGATCGACAATGTCAAGCAAAAGATTCAAGACAAGGAAGGCATTCCCCCTGACCAG 195853 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||||| ||| ||||| || |||| |||| ||||| ||| ||||||||| Sbjct 195852 CAGCGCCTCATTTTCGCCGGCAAGCAATTGGAAGACGGCCGCACGCTCTCTGACTACAAC 195793 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || |||||||| | ||||||||||||||||| ||| Sbjct 195792 ATTCAAAAGGAGTCCACGCTGCATTTGGTGCTCCGT 195757 Score = 129 bits (142), Expect = 6e-25 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || |||||||| ||||| || || ||||| ||||| |||||||| | || |||||| | Sbjct 196431 AACATGCAAATTTTCGTCAAGACTCTCACTGGCAAGACCATCACTCTGGAGGTCGAGTCG 196372 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | ||| | | | | || |||| || | ||||| ||||| |||||| ||||| Sbjct 196371 TCGGACTCTATTGACAATGTCAAGCAAAAGATTCAAGACAAGGAGGGTATTCCCCCCGAC 196312 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | || ||||| ||||| || || | ||||| || |||||| Sbjct 196311 CAGCAGCGCCTTATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTGTCTGACTAC 196252 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||||| | ||| |||| |||||||| ||| Sbjct 196251 AACATCCAAAAGGAGTCCACGTTGCACTTGGTGCTCCGT 196213 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || ||||| ||||||||| |||| |||||| | | Sbjct 195744 ATGCAGATCTTTGTCAAGACTTTGACTGGCAAGACCATCACCCTCGAGGTCGAGTCGTCG 195685 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | || |||| |||| ||||| || || || || ||||||| Sbjct 195684 GATTCCATCGACAATGTCAAGCAAAAGATCCAGGACAAGGAAGGTATCCCTCCCGACCAG 195625 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || ||||| ||||| || || | ||||| || |||||||||| Sbjct 195624 CAGCGCCTTATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTGTCCGACTACAAC 195565 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 |||||||||||| | ||||| || ||||| |||||| | | || |||| Sbjct 195564 ATCCAAAAGGAATCCACGCTCCACTTGGTCCTGCGTCTCCGCGGTGGCC 195516 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || ||||| |||||||| |||| |||||| | | Sbjct 196200 ATGCAGATCTTTGTTAAGACTTTGACTGGCAAGACCATCACGCTCGAGGTCGAGTCGTCG 196141 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | || |||| |||| ||||| || || || || ||||||| Sbjct 196140 GATTCCATTGATAATGTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCTCCCGACCAG 196081 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | || ||||| || |||| || | |||||| | || |||||| Sbjct 196080 CAGCGCCTCATCTTTGCCGGCAAGCAATTGGAAGATGGCCGCACCTTGTCTGATTACAAC 196021 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || || || ||||| || ||| Sbjct 196020 ATCCAAAAGGAATCTACCCTCCACTTGGTCCTCCGT 195985 >seq56 Length=224513 Score = 116 bits (128), Expect = 4e-21 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || |||||||| ||||| |||||||| | || || || | | Sbjct 32653 ATGCAAATCTTCGTCAAGACGCTCACTGGCAAGACCATCACACTTGAGGTTGAATCGTCG 32594 Query 38304 GA--CAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || || || || | | || |||| |||| ||||| ||||| ||||| | || | Sbjct 32593 GATTCAAT-TGATAATG-TGAAGCAAAAGATCCAAGACAAGGAGGGTATTCCGCCTGATC 32536 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || || ||||| | || ||||| || |||| || | ||||| || || |||| Sbjct 32535 AGCAACGACTCATCTTTGCCGGCAAGCAATTGGAGGATGGCCGCACGCTGTCGGATTACA 32476 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||||||| ||||| |||| |||||||||| ||| | |||||| Sbjct 32475 ACATCCAAAAGGAGTCGACGTTGCACCTGGTGCTGCGATTGCGCGGCGGC 32426 >seq1 Length=1252801 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 38326 AAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385 |||| |||| ||||| || || |||||| ||||||| ||||| | || | ||| |||| Sbjct 333650 AAAAGATCCAAGACAAGGAAGGTATTCCCCCCGACCAGCAGCGCTTGATCTTCGCTGGCA 333591 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445 | ||| |||| |||| |||||| | ||||||||||||||| ||||| | || || | Sbjct 333590 AGCAGTTGGAAGACGGCCGCACCTTGTCCGACTACAACATCCAGAAGGAGTCCACCCTCC 333531 Query 38446 ATTTGGTGCTGCGT 38459 | ||||| || ||| Sbjct 333530 ACTTGGTCCTCCGT 333517 >seq94 Length=66050 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 38326 AAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385 |||| |||| ||||| ||||| || ||| | ||||| ||||| | || | ||| |||| Sbjct 22943 AAAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCTTGATCTTCGCCGGCA 22884 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445 | || |||| || | ||||| | ||||||||||||||||||||| |||| || | Sbjct 22883 AGCAATTGGAAGATGGCCGCACGTTGTCTGACTACAACATCCAAAAGGAATCGACTCTCC 22824 Query 38446 ATTTGGTGCTGCGT 38459 | ||||| || ||| Sbjct 22823 ACTTGGTCCTTCGT 22810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171868428160