Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq61 149 8e-31 seq5 132 6e-26 seq33 102 1e-16 >seq61 Length=186913 Score = 149 bits (164), Expect = 8e-31 Identities = 482/740 (65%), Gaps = 25/740 (3%) Strand=Plus/Minus Query 111622 TGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTTTTGGAGACAT 111681 || ||||||| || || | ||||||||||| ||||| |||||| | | ||||||||| | Sbjct 185051 TGATCATGCGTGTGGCTGTTGGTATCCATGGCGAAGACATTGATGCCGCTTTGGAGACGT 184992 Query 111682 ACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTCAACGCTGGTA 111741 || | ||||| | | |||| ||||| | || || | ||||| || || | Sbjct 184991 ACCAGCTCATGTCGGAGCGATTCTTCACGCACGCGAGCCCGACGTTGTTCAATGCCGGCA 184932 Query 111742 CACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAAC----AAGGAGGATTCAATC 111797 | || | || |||||||| || | | ||| |||| || |||||||| || || Sbjct 184931 CGCCTCGCCCGCAAATGTC--GTCG--TGCTTCTTGCTGACTATGAAGGAGGACTCGATT 184876 Query 111798 AATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATC 111857 | ||||| |||| || |||| ||||| |||||||| ||| ||| || || || Sbjct 184875 GAGGGCATCTACGAGACGCTCAAGTGCTGTGCGCAAATCTCCAAGACGGCCGGCGGCATT 184816 Query 111858 GGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGT--ATTAGAGGTACAAATGGTC 111915 || || ||||||| | || | |||| | ||||| ||| || || ||||| Sbjct 184815 GGCTTGAACATCCACAACATCCGCGCCA--CGGGCTCGTACATTGCCGGCACCAATGGCA 184758 Query 111916 AATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACC 111975 | ||||| | | || ||||| ||||| || ||| ||| |||||||| || ||| Sbjct 184757 CGGCCAATGGTCTGTTGCCTATGCTGCGCGTGTTCAACAACACGGCGCGCTACGTTGACC 184698 Query 111976 AAGCTGGG---CGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATA 112032 ||| ||| ||| ||| | | || | || || ||||| |||||||| || | Sbjct 184697 AAGGAGGGAACAAGCGCCCGGGTGCGTTTGCCATGTACCTCGAGCCTTGGCACGCCGACA 184638 Query 112033 TCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAG----GCGCGGTGCCGC 112088 | | || | || ||||| ||| || | || ||| ||||| ||| Sbjct 184637 TTTTCACCTTTTTGGAATTGCGCAAGAACGTGGGCAAGGACGAGATCCGCGCG----CGC 184582 Query 112089 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 112148 ||| | || | ||| |||||| | || ||| | ||||||||| | || |||| | |||| Sbjct 184581 GATTTGTTTTACGCGCTCTGGGTGCCTGATTTGTTCATGAAGCGTGTCGAGGCCAATGGC 184522 Query 112149 AATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAG 112208 | ||||| |||||||| || || |||| ||| | | ||| | ||| || || Sbjct 184521 GACTGGTCGCTCTTTTGCCCCAACGAGGCGCCCAATTTGCACGAGGTGTGGGGCGATGAA 184462 Query 112209 TTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGCCAGCT 112268 || || ||| | | ||||||||| | || | || ||| |||| | | || Sbjct 184461 TTCGAGGCCTTGTTTGAAAAGTACGAAAAGGAGGGCCGTGCGCGCCAGACGAT-CAAGGC 184403 Query 112269 GCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCT 112327 || | | ||||| | || |||||| || | || |||||||| || | || | || | Sbjct 184402 GCAAAAGTTGTGGTACGCGATTCTCGAGGCCCAGACCGAGACGGGCAATCCGTTCATCTT 184343 Query 112328 TTACAAAGACGCCTGTAACC 112347 ||||| ||||| || |||| Sbjct 184342 GTACAAGGACGCGTGCAACC 184323 >seq5 Length=887111 Score = 132 bits (146), Expect = 6e-26 Identities = 269/394 (68%), Gaps = 4/394 (1%) Strand=Plus/Plus Query 13593 CGCATCTATCAAGCCTCTTCATCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAAC 13652 ||| |||| |||||||| | || ||| ||| ||| |||||| ||| | || ||||| Sbjct 16383 CGCTTCTACCAAGCCTCCACCTCTGAGCTGTATGGCAAGGTTGTCGAGACTCCCCAAAAG 16442 Query 13653 GAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGT-TGCGGCACATTG 13711 ||| || ||||||||||| |||||| ||| || || | ||| | | ||| | || Sbjct 16443 GAGACCACGCCCTTCTACCCTCGCTCGCCCTATGGTGTTGCCAAGCTGTATGGCT-ACTG 16501 Query 13712 GCTCGTAAAGAATTACCGCGAGTCTTACGGACTGTTTGCATGCTCCGGAATCCTCTTCAA 13771 | |||| || ||||||||||| ||| ||| || ||| || ||||| || || Sbjct 16502 GATCGTCGTCAACTACCGCGAGTCCTACAACATGTACGCGTGCAATGGCATCCTGTTTAA 16561 Query 13772 CCATGAATCACCGAGACGAGGT-GCAGACTTTGTGACCATGAAGATTACCGAGGGTATCA 13830 ||| || || || | || || ||| |||||| ||| ||||| | | | | || Sbjct 16562 CCACGAGTCTCCCCGCCGTGGCCGCAC-CTTTGTCACCCGCAAGATCAGCCGTGCTGTCG 16620 Query 13831 AACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAG 13890 | ||| |||| |||| | | | | ||||| ||||| |||| || | | Sbjct 16621 CCGACATCCACTTGGGTCGCCAGGAATGCTTGTATTTGGGCAACATTGACGCCAAGCGCG 16680 Query 13891 ATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAG 13950 ||||||| ||||| |||||||| || || | |||||||||||||| || || || || Sbjct 16681 ATTGGGGCCACGCCAAGGACTACGTCGAGGGCATGTGGCTCATGCTCCAGCAGGACGAGC 16740 Query 13951 CCGACGAATATGTAGTAGCAACGGGTGAGACCCA 13984 |||| || | ||| | || ||||| |||||||| Sbjct 16741 CCGAAGACTTTGTCCTTGCCACGGGCGAGACCCA 16774 >seq33 Length=455653 Score = 102 bits (112), Expect = 1e-16 Identities = 120/160 (75%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233 ||||| ||||| || | || |||||| |||||||| || |||||||||||| | || Sbjct 391240 TTTGCCGAGCGCCTTGTTGCTTTTGCGGCGGTTGAGGGCATTTTCTTCTCTGGTGCGTT- 391182 Query 102234 TGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||| | || | ||||||||||||||| || | ||||| || | ||||||||||| Sbjct 391181 TGCGTCCATCTTTTGGCTCAAGAAGCGCGGCTTGATGCCTGGCTTGACGTTCTCCAACGA 391122 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 102332 ||| || | ||||||||||| | ||| || |||||| Sbjct 391121 GCTGATTTGCCGTGACGAGGGTTTGCACACGGACTTTGCG 391082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741243867280