Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq61 156 5e-33 seq5 150 2e-31 seq33 113 5e-20 seq15 102 1e-16 seq65 86.0 7e-12 >seq61 Length=186913 Score = 156 bits (172), Expect = 5e-33 Identities = 865/1364 (63%), Gaps = 30/1364 (2%) Strand=Plus/Plus Query 105947 GTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATT 106006 |||||||| || ||||| ||||| || | ||||| | |||||||| || ||||| Sbjct 183698 GTGTAGGGCTCGAAGCACTCATTGAAGCCGAGCATTTGCGACGTGGAGGCGGTGGGCATG 183757 Query 106007 GGTGCCATCA--AAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACAT 106064 || || | | || || ||| || | ||| | | || ||| ||||||| Sbjct 183758 GGGGCGACAAGCAATGA--GTTGCGGACACCGTGCTGGGCGACCTGTTGCTTGAGAGTGG 183815 Query 106065 CCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATATCAAATTG-AAGCACCCCTT 106121 |||| || | | | || | || |||| |||| ||||||| | || ||| ||||| Sbjct 183816 CCCAATCCCAAAGATCAG-TGGGGGTCACGTTCC-ACATATCGTACTGGAAGATGCCCTT 183873 Query 106122 GGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGC 106181 || || ||| || ||| | ||||| |||| |||||| | |||||||| | Sbjct 183874 GG-ACACGGGGCTGCCTTCATAGGTCTCGTAGGGGCCTTGGACGCGCGCCAATTCCATGG 183932 Query 106182 TCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTT 106241 | ||||| || ||||| || |||||||||||||| || || | | |||||||| Sbjct 183933 ATGTCTCCATGGCGGCGTGGTAAATGGTTTCAAAGATTTGAATGTTGAGCATCTTGGCTT 183992 Query 106242 CATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCA 106301 | || || || |||| ||||| | || || || || || || || | |||| Sbjct 183993 CCTCCGAGTCGAATGGATAGCGCATGAGCATGAAGGTGTCAGCCAGGCCCTGGATGCCCA 184052 Query 106302 AACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAA---CGGGATAAAAAT 106358 | ||||| || | ||| || | || || |||| | | ||||| |||| ||| ||| Sbjct 184053 AGCCAATGGGGCGGTGGCGAAGGTTGGA---TCGCTCGGCCTCAATGACGGGGTAATAAT 184109 Query 106359 TTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTT 106418 | || |||| ||| | ||| || | | ||| | | || | ||| | Sbjct 184110 TGACATCGATGATCTTGTTCAAATTGCGCGTGATCACCTTGACAACCTGGTGCAATTTCT 184169 Query 106419 CATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAAT 106478 ||||||| || | | | || | ||| || ||| | || || ||||| | Sbjct 184170 TGAAATCAAACGT-CTTG-CGGTTGAC-GACGTATGATGGCAACGCAATGCTGGCCAAGT 184226 Query 106479 TGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAAC 106538 |||| || || ||||||| | ||| || | ||| || || ||||| ||| | Sbjct 184227 TGCACACGGCAATCTCATCGGGGCTCGAGTATTCGACAATCTCCGTGCACAAATTGCTGC 184286 Query 106539 TCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCA 106598 || || || || | |||| ||||| || ||||||||| |||||||| | | Sbjct 184287 ATTTGATGGTGCCGAGGTTCTGCTGGTTGGATTTGCGGTTGCACGCGTCCTTGTACAAGA 184346 Query 106599 TGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCT 106657 || | || | |||||||| ||||| | || |||||| || | ||||| | | ||| || Sbjct 184347 TGAACGGATTGCCCGTCTCGGTCTGGGCCTCGAGAATCGCGTACCACAACTTTTGCGCCT 184406 Query 106658 GGTACAA-TGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTC 106716 | | ||||| || || |||||| ||||||||| | | ||| || || || Sbjct 184407 TGATCGTCTGGCGC--GCACGGCCCTCCTTTTCGTACTTTTCAAACAAGGCCTCGAATTC 184464 Query 106717 CTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACC 106776 || ||| | | ||| | | || |||| || || || || || ||||| | || Sbjct 184465 ATCGCCCCACACCTCGTGCAAATTGGGCGCCTCGTTGGGGCAAAAGAGCGACCAGTCGCC 184524 Query 106777 ACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCT 106836 | |||| || ||||||||||| | || || | ||| || | |||| | ||| | Sbjct 184525 ATTGGCCTCGACACGCTTCATGAACAAATCAGGCACCCAGAGCGCGTAAAACAAATCGCG 184584 Query 106837 ACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGC 106896 || ||| || | || ||| || || || | || | || || || Sbjct 184585 CGCGCGGATCTCGTCCTTGCCCACGTTCTTGCGCAATTCCAAAAAGGTGAAAATGTCGGC 184644 Query 106897 GTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACG---CCCAGCTTGATTTAC 106953 |||||| ||||| || || | || | | ||| || ||| |||| | || Sbjct 184645 GTGCCAAGGCTCGAGGTACATGGCAAACGCACCCGGGCGCTTGTTCCCTCCTTGGTCAAC 184704 Query 106954 ATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATT 107013 |||||||| ||| ||| || ||||| ||||| || | | ||||| | ||||| Sbjct 184705 GTAGCGCGCCGTGTTGTTGAACACGCGCAGCATAGGCAACAGACCATTGGCCGTGCCATT 184764 Query 107014 TGTCCCCCGAAT--ACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCC 107071 || || ||| ||||| |||| | | | ||||||| || ||||| || Sbjct 184765 GGTGCCGGCAATGTACGAGCCCG--TGGCGCGGATGTTGTGGATGTTCAAGCCAATGCCG 184822 Query 107072 CCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAG 107131 || ||| ||| |||||||||||||| | | || || | ||||| || | || ||| Sbjct 184823 CCGGCCGTCTTGGAGATTTGCGCACAGCACTTGAGCGTCTCGTAGATGCCCTCAATCGAG 184882 Query 107132 TCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTG 107191 |||||||| | | | | |||||| ||||| ||||| | || || || |||||| Sbjct 184883 TCCTCCTTCATAGTCAGCAAGAAGCACGACGACATTTGCGGGCGAGGCGTGCCGGCATTG 184942 Query 107192 AAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAG 107251 || | || || | ||||| |||| | | | ||||| | ||| |||||||| Sbjct 184943 AACAACGTCGGGCTCGCGTGCGTGAAGAATCGCTCCGACATGAGCTGGTACGTCTCCAAA 185002 Query 107252 ACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCAT 107295 | | |||||||||||| || ||||| || | ||||||||||| Sbjct 185003 GCGGCATCAATGTCTTCGCCATGGATACCAACAGCCACACGCAT 185046 >seq5 Length=887111 Score = 150 bits (166), Expect = 2e-31 Identities = 273/394 (69%), Gaps = 4/394 (1%) Strand=Plus/Plus Query 6900 CGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAAC 6959 ||| |||| |||||||| |||| ||| ||| ||| |||||| ||| | || ||||| Sbjct 16383 CGCTTCTACCAAGCCTCCACCTCTGAGCTGTATGGCAAGGTTGTCGAGACTCCCCAAAAG 16442 Query 6960 GAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGT-TGCGGCACATTG 7018 ||| || ||||||||||| |||||| ||| || || | ||| | | ||| | || Sbjct 16443 GAGACCACGCCCTTCTACCCTCGCTCGCCCTATGGTGTTGCCAAGCTGTATGGC-TACTG 16501 Query 7019 GCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAA 7078 | ||||| || ||||||||||| ||| ||| |||||| || ||||| || || Sbjct 16502 GATCGTCGTCAACTACCGCGAGTCCTACAACATGTACGCGTGCAATGGCATCCTGTTTAA 16561 Query 7079 CCATGAATCACCGAGACGAGG-TGCAGACTTTGTCACAAAGAAGATTACCGAGGGTATCA 7137 ||| || || || | || || ||| ||||||||| ||||| | | | | || Sbjct 16562 CCACGAGTCTCCCCGCCGTGGCCGCA-CCTTTGTCACCCGCAAGATCAGCCGTGCTGTCG 16620 Query 7138 AACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAG 7197 | ||| |||| |||| | | | | ||||| ||||| |||| || | | Sbjct 16621 CCGACATCCACTTGGGTCGCCAGGAATGCTTGTATTTGGGCAACATTGACGCCAAGCGCG 16680 Query 7198 ATTGGGGTCACGCGAAGGACTATGTTGAAGCCATGTGGCTCATGCTTCAACAAGAGGAAG 7257 ||||||| ||||| |||||||| || || | ||||||||||||||| || || || || Sbjct 16681 ATTGGGGCCACGCCAAGGACTACGTCGAGGGCATGTGGCTCATGCTCCAGCAGGACGAGC 16740 Query 7258 CCGACGAATATGTAGTAGCAACGGGTGAGACCCA 7291 |||| || | ||| | || ||||| |||||||| Sbjct 16741 CCGAAGACTTTGTCCTTGCCACGGGCGAGACCCA 16774 >seq33 Length=455653 Score = 113 bits (124), Expect = 5e-20 Identities = 296/441 (67%), Gaps = 8/441 (2%) Strand=Plus/Plus Query 116995 ACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAAAT 117054 || |||||||||||||| |||||||| || | || ||| |||||||||||||| Sbjct 390804 ACACGCTTCTCAAAGAAATTGGTCTTGCCCTGGAGCGAGATGAGGTCCATAAAGTCAAAG 390863 Query 117055 GGATTCTTCGCGTTCCAAATGGGTGGCACC-CCAACTTGTTTGAGGAGACGATCCGACAC 117113 ||||| | || || | || || | |||| ||| || || |||| || Sbjct 390864 GGATTGGTTGCCTTGTAG-TGCTTGTCCTGGCCAAGAGCAACGAGCAGGCGGTCCGCAAC 390922 Query 117114 ATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATT-ACATGGGAGTG 117172 | | |||||||| | | |||| || |||||||| || ||||| ||| || || | Sbjct 390923 AAATTCAATGTATTGGCACATGAGCTTGGAGTTCATGCCAATGAGCGCGACA-GGCAGCG 390981 Query 117173 CGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATAGTTT 117232 |||| | ||| ||| |||||||| || ||||| | | ||| || | | | | Sbjct 390982 CGTCGGTCAGGAATTCTTGCTCAATCTTGACGGCCTCGGTGATGATATCGCGCACACGGT 391041 Query 117233 CGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTC-CACGGCAAACTCCTGGTGGAGA 117291 | | | || | || |||| | |||||| |||| |||| ||| ||| | | Sbjct 391042 CATTGGAAGGCGTGTTGCGCAGATGGCCAAAGAGCAGGCACG-CAAAGTCCGTGTGCAAA 391100 Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 ||||| || ||| |||| || || || ||||| | ||| ||||| | || |||||| Sbjct 391101 CCCTCGTCACGGCAAATCAGCTCGTTGGAGAACGTCAAGCCAGGCATCAAGCCGCGCTTC 391160 Query 117352 TTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAA 117410 || | |||| | || | |||| || | || |||||||| || ||||| || |||||| Sbjct 391161 TTGAGCCAAAAGATGGACGCA-AACGCACCAGAGAAGAAAATGCCCTCAACCGCCGCAAA 391219 Query 117411 CGCAAAAAGGCGCTCGGCGAA 117431 |||| |||||||||||| || Sbjct 391220 AGCAACAAGGCGCTCGGCAAA 391240 >seq15 Length=628964 Score = 102 bits (112), Expect = 1e-16 Identities = 235/349 (67%), Gaps = 4/349 (1%) Strand=Plus/Plus Query 6945 GAGTCACCACAAAACGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAG 7004 ||| | || ||||| ||| || ||||| || || |||||| ||| || || | ||| Sbjct 137574 GAGACGCCCCAAAAGGAGACTACGCCCTTTTATCCTCGCTCGCCCTATGGTGTTGCCAAG 137633 Query 7005 GT-TGCGGCACATTGGCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTC 7063 | | ||| | || ||||| ||||||||||| || ||| ||| |||||| Sbjct 137634 CTGTATGGCTTCT-GGATCGTCGTCAATTACCGCGAATCCTACAACATGTACGCGTGCAA 137692 Query 7064 CGGAATCCTCTTCAACCATGAATCACCGAGACGAGGT-GCAGACTTTGTCACAAAGAAGA 7122 || ||||| |||||||| || || || | || || ||| ||||||||| |||| Sbjct 137693 TGGCATCCTGTTCAACCACGAGTCTCCCCGCCGTGGCCGCAC-CTTTGTCACCCGCAAGA 137751 Query 7123 TTACCGAGGGTATCAAACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACA 7182 | | | | | || | ||| |||| |||| | | | | ||||| |||| Sbjct 137752 TCAGCCGTGCTGTCGCCGACATCCACTTGGGTCGCCAGGAATGCTTGTATTTGGGCAACA 137811 Query 7183 TAAACGCGGAGAGAGATTGGGGTCACGCGAAGGACTATGTTGAAGCCATGTGGCTCATGC 7242 | |||| || | |||||||| ||||| |||||||| || || | |||||||||||||| Sbjct 137812 TTGACGCCAAGCGCGATTGGGGCCACGCCAAGGACTACGTCGAGGGCATGTGGCTCATGC 137871 Query 7243 TTCAACAAGAGGAAGCCGACGAATATGTAGTAGCAACGGGTGAGACCCA 7291 | || || || || |||| || | ||| | || ||||| || || || Sbjct 137872 TCCAGCAGGACGAGCCCGAAGACTTTGTTCTGGCCACGGGCGAAACACA 137920 >seq65 Length=159763 Score = 86.0 bits (94), Expect = 7e-12 Identities = 124/174 (71%), Gaps = 6/174 (3%) Strand=Plus/Plus Query 107131 GTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATT 107190 ||| ||||| || || ||| |||||||||||| || || | || || || ||||| Sbjct 96479 GTCATCCTTCATGTTGACCAGGTAGCAACTGGACAATTGAGGGCGCGGGGTGCCTGCATT 96538 Query 107191 GAAGAGGGTTGGTGTTGCGTG---AATGAACATACCTTGGGACATCTTGTCGTATGTCTC 107247 |||||||||||| || || || || |||| | | | ||||| ||| || |||| Sbjct 96539 GAAGAGGGTTGGGGTGGCATGGGTAAAGAACTTGC---GAGACATGAGGTCATAGGTCTG 96595 Query 107248 CAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACAT 107301 ||| | | || | ||||| ||||||||||| | ||| |||||||| | ||| Sbjct 96596 GAAGGCGGCGTCCAGGTCTTTGCCGTGGATGCCAAGGGCAACACGCATGACCAT 96649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589979701160760