Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq30 143 6e-29 seq45 136 9e-27 seq1 113 1e-19 seq94 98.7 2e-15 >seq30 Length=460931 Score = 143 bits (158), Expect = 6e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||| || ||||| || ||||| |||| || || | ||||| |||||||| Sbjct 195541 GTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCGGACAGCGTGCGGCCATCCTCGAGCTG 195600 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || |||||||| || || ||||| ||||| || ||||| ||||| || || || Sbjct 195601 CTTGCCGGCAAAGATAAGGCGCTGCTGGTCGGGAGGGATACCTTCCTTGTCCTGGATCTT 195660 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| || || |||| ||||| || || || ||||| | ||||| || || Sbjct 195661 TTGCTTGACATTGTCGATGGAATCCGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGT 195720 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 |||||| || || || | ||||| Sbjct 195721 CAAAGTCTTGACAAAGATCTGCAT 195744 Score = 143 bits (158), Expect = 6e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 |||||||| ||||| || ||||| || | || || | ||||| ||||||||||| || Sbjct 196232 GTGGACTCCTTTTGGATGTTGTAGTCAGACAGCGTGCGGCCATCCTCGAGCTGCTTGCCG 196291 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || |||||||| || || ||||| || ||||| || || ||||||||||| ||||||||| Sbjct 196292 GCAAAGATAAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCTTGAATCTTTTGCTTG 196351 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || ||||| | |||||| || || || || || | ||||| || || | ||| Sbjct 196352 ACATTGTCAATAGAGTCCGACGACTCGACCTCCAGAGTGATGGTCTTGCCAGTGAGAGTC 196411 Query 195124 TTTACGAACACTTGCAT 195140 || ||||| | |||||| Sbjct 196412 TTGACGAAAATTTGCAT 196428 Score = 129 bits (142), Expect = 1e-24 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCT 194995 ||| || || || || ||||| || |||||||| | |||| || | |||||||| | | Sbjct 195997 GTGGAGGGTAGATTCCTTTTGGATGTTGTAATCAGACAAG-GTGCGGCCATCTTCCAATT 196055 Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 |||| || || ||||| || || || ||||| ||||| |||||||| ||||| || || | Sbjct 196056 GCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCT 196115 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 |||||||||| || ||||||| ||||| || || || || || | ||||| || | Sbjct 196116 TTTGCTTGACATTATCAATGGAATCCGACGACTCGACCTCGAGCGTGATGGTCTTGCCAG 196175 Query 195116 TCAAAGTTTTTACGAACACTTGCAT 195140 ||||||| || || || | ||||| Sbjct 196176 TCAAAGTCTTAACAAAGATCTGCAT 196200 Score = 123 bits (136), Expect = 6e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || |||||||| |||||||| ||||| || | || || | || ||||| | ||| Sbjct 195770 TGCAGCGTGGACTCCTTTTGAATGTTGTAGTCAGAGAGCGTGCGGCCGTCTTCCAATTGC 195829 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || ||||| || || || || ||||| || ||||||||||| ||||||||||| ||| Sbjct 195830 TTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGAATCTTT 195889 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 |||||||| || || || | || || ||| ||||| | || | ||||| || || Sbjct 195890 TGCTTGACATTGTCGATCGAATCGGACGATTCGACTTCCAAAGTGATGGTCTTGCCAGTG 195949 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | || || || || | |||||| Sbjct 195950 AGCGTCTTGACAAAGATTTGCAT 195972 >seq45 Length=303593 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| || ||||| || |||||||| ||||| || | || || | ||||| || Sbjct 87093 AACCAAGTGGAGCGTGGATTCCTTTTGAATGTTGTAGTCAGAGAGCGTGCGGCCATCCTC 87034 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | ||||| || ||||| || | || || ||||| ||||| |||||||| |||||||| Sbjct 87033 CAATTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTG 86974 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 |||||| |||||||| || ||||||| ||| || ||||| || || || | ||||| Sbjct 86973 AATTTTCTGCTTGACATTGTCAATGGAGTCGGACGACTCCACCTCGAGTGTGATGGTCTT 86914 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | |||||| Sbjct 86913 GCCAGTGAGCGTCTTGACGAAGATTTGCAT 86884 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||| || ||||| || ||||| || | || || | ||||| |||||||| Sbjct 86859 GTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGCGTGCGGCCATCCTCGAGCTG 86800 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || ||||| || || || || ||||| ||||| |||||||| |||||||| || || Sbjct 86799 CTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTT 86740 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| || || |||| || || ||||| || | ||| | ||||| || || Sbjct 86739 TTGCTTGACATTGTCGATGGAATCGGACGACTCCACCTCCAAGGTGATGGTCTTGCCAGT 86680 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | ||||| Sbjct 86679 GAGCGTCTTGACGAAAATCTGCAT 86656 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||| || ||||| || ||||| |||| ||| || | || ||||| | || Sbjct 87543 GTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGCGTGCGGCCGTCTTCCAATTG 87484 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || ||||| || || |||||||| ||||| |||||||| |||||||| || || Sbjct 87483 TTTGCCGGCAAAGATGAGGCGCTGTTGGTCGGGAGGGATGCCTTCCTTGTCTTGGATCTT 87424 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| || || |||| || || ||| || || | || | ||||| || || Sbjct 87423 TTGCTTGACATTGTCGATGGAATCGGACGATTCGACCTCCAAAGTGATGGTCTTGCCGGT 87364 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| || || || || | ||||| Sbjct 87363 CAAGGTCTTGACAAAGATCTGCAT 87340 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | || ||| | ||| ||||||||||| ||||| || ||||| || | || || | Sbjct 86646 GAGACGCAGAACCAAGTGCAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAGCGTGCG 86587 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 || || || |||||||| || || || || | || || || || || |||||||| || Sbjct 86586 GCCGTCCTCCAGCTGCTTGCCGGCAAAAATCAAACGCTGCTGATCGGGGGGAATGCCCTC 86527 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 |||||||| ||||| ||||||||||| || || | || || || || || || || Sbjct 86526 CTTGTCTTGGATTTTCTGCTTGACGTTGTCGATAGAATCGGACGACTCGACCTCCAGAGT 86467 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | ||| || ||||| | |||||| Sbjct 86466 GATGGTCTTGCCAGTGAGAGTCTTGACGAAAATTTGCAT 86428 Score = 116 bits (128), Expect = 8e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||||| || || || || |||||||| | |||| || | || ||||| | ||||| || Sbjct 87308 GTGGATTCCTTCTGGATGTTGTAATCAGACAAG-GTGCGGCCGTCTTCCAATTGCTTGCC 87250 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 || ||||| || || || ||||| || ||||||||||| |||||||| || |||||||| Sbjct 87249 GGCAAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCTTGGATCTTTTGCTT 87190 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 ||| || || |||| ||| || ||| || || | || | ||||| || ||||| || Sbjct 87189 GACATTGTCGATGGAGTCGGACGATTCGACCTCCAAAGTGATGGTCTTGCCGGTCAAGGT 87130 Query 195123 TTTTACGAACACTTGCAT 195140 || || || | ||||| Sbjct 87129 CTTGACAAAGATCTGCAT 87112 >seq1 Length=1252801 Score = 113 bits (124), Expect = 1e-19 Identities = 117/151 (77%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCT 194995 ||| || |||||||| || || || ||||| |||| |||| || | || ||||| | || Sbjct 333529 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAAG-GTGCGGCCGTCTTCCAACT 333587 Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 |||| || |||||||| | || || ||||| || ||||| ||||| |||||||| || | Sbjct 333588 GCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATACCTTCCTTGTCTTGGATCT 333647 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACT 195086 |||||||||| || ||||| | ||| || || Sbjct 333648 TTTGCTTGACATTGTCAATCGAGTCAGAGCT 333678 >seq94 Length=66050 Score = 98.7 bits (108), Expect = 2e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||| || || ||||| || ||||| || | | || | |||||||| | || Sbjct 22822 GTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCAGACAACGTGCGGCCATCTTCCAATTG 22881 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| | || || ||||| || || ||||| || |||||||| || || Sbjct 22882 CTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATCTT 22941 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTT 195088 ||||||||| || || || | ||| || |||| Sbjct 22942 TTGCTTGACATTGTCGATAGAGTCAGAGCTTT 22973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109479481930283