Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq30 109 4e-19 seq56 93.3 3e-14 seq45 93.3 3e-14 >seq30 Length=460931 Score = 109 bits (120), Expect = 4e-19 Identities = 155/214 (72%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| ||| || || ||||| ||||| || || | || |||| || Sbjct 195536 ACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCGGACAGCGTGCGGCCATCCTCG 195595 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || || || |||||||| | || | || |||||||| Sbjct 195596 AGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCGGGAGGGATACCTTCCTTGTCCTGG 195655 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCA--CCGGC--CTCAACATCGACGGTTATGGT 34948 ||||| || ||||| || | ||||| | ||| | ||| || |||| ||| ||||| Sbjct 195656 ATCTTTTGCTTGAC--AT--TGTCGATGGAATCCGACGACTCGACCTCGAGGGTGATGGT 195711 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || | |||||| ||||||||||||||| Sbjct 195712 CTTGCCAGTCAAAGTCTTGACAAAGATCTGCATA 195745 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || || || ||||| ||||| || || | || |||| || Sbjct 196220 ACCAAGTGCAACGTGGACTCCTTTTGGATGTTGTAGTCAGACAGCGTGCGGCCATCCTCG 196279 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || || || |||||||| | || | ||||||||||| | Sbjct 196280 AGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCTTGA 196339 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || ||||| | || || || | ||| || || | || ||||| || Sbjct 196340 ATCTTTTGCTTGACATTGTCAATAGAGTCCGACGACTCGACCTCCAGAGTGATGGTCTTG 196399 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATTCGTAGA 34990 || ||||||||||| || || || ||||| || | ||| Sbjct 196400 CCAGTGAGAGTCTTGACGAAAATTTGCATGTTGGGAGA 196437 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || ||| || || ||||| || || || | | | || |||| ||| Sbjct 195992 ACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAATCAGACAAGGTGCGGCCATCTTCC 196051 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | || || |||||||| || || || |||||||| | || | || |||||||| Sbjct 196052 AATTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGG 196111 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCA--CCGGC--CTCAACATCGACGGTTATGGT 34948 ||||| || ||||| || |||| || | ||| | ||| || |||| || ||||| Sbjct 196112 ATCTTTTGCTTGAC--AT--TATCAATGGAATCCGACGACTCGACCTCGAGCGTGATGGT 196167 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || | |||||| ||||||||||||||| Sbjct 196168 CTTGCCAGTCAAAGTCTTAACAAAGATCTGCATA 196201 >seq56 Length=224513 Score = 93.3 bits (102), Expect = 3e-14 Identities = 140/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || ||||| || ||||| || | || |||| |||| || || |||||||| Sbjct 32463 TCCTTTTGGATGTTGTAATCCGACAGCGTGCGGCCATCCTCCAATTGCTTGCCGGCAAAG 32522 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || ||||||||||| || |||| | ||||||||||| ||||| || || || || Sbjct 32523 ATGAGTCGTTGCTGATCAGGCGGAATACCCTCCTTGTCTTGGATCTTTTGCTTCAC--AT 32580 Query 34911 GCTATCGATTCA--CCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 |||| ||| | ||| | ||||| || | || ||||| || || ||||| ||||| Sbjct 32581 --TATCAATTGAATCCGACGATTCAACCTCAAGTGTGATGGTCTTGCCAGTGAGCGTCTT 32638 Query 34967 CACAAAGATCTGCAT 34981 || ||||| ||||| Sbjct 32639 GACGAAGATTTGCAT 32653 >seq45 Length=303593 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 || ||||||||| | ||| || || || ||||| ||||| || || | || | || Sbjct 86640 CAGAACCAAGTGCAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAGCGTGCGGCCGTC 86581 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 |||||||| || |||||||| || | || ||||| || | || | ||||||||||| Sbjct 86580 CTCCAGCTGCTTGCCGGCAAAAATCAAACGCTGCTGATCGGGGGGAATGCCCTCCTTGTC 86521 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 || ||||| |||||| | || || || | ||| || || | || ||||| Sbjct 86520 TTGGATTTTCTGCTTGACGTTGTCGATAGAATCGGACGACTCGACCTCCAGAGTGATGGT 86461 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || ||||||||||| || || || |||||| Sbjct 86460 CTTGCCAGTGAGAGTCTTGACGAAAATTTGCATA 86427 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| ||| || || ||||| ||||| ||||| | || | || ||| Sbjct 87548 ACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGCGTGCGGCCGTCTTCC 87489 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||||| |||||||| || || || || ||||| | || | || |||||||| Sbjct 87488 AATTGTTTGCCGGCAAAGATGAGGCGCTGTTGGTCGGGAGGGATGCCTTCCTTGTCTTGG 87429 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCAC-CGGCC---TCAACATCGACGGTTATGGT 34948 ||||| || ||||| || | ||||| | ||| | || || || | || ||||| Sbjct 87428 ATCTTTTGCTTGAC--AT--TGTCGATGGAATCGGACGATTCGACCTCCAAAGTGATGGT 87373 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || | ||||| |||||||||||||| Sbjct 87372 CTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 87340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633010485672