Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq45 136 3e-27 seq30 134 1e-26 seq56 109 4e-19 seq94 95.1 1e-14 >seq45 Length=303593 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || | ||| ||||| || || || |||||||| | | || | | | || ||| Sbjct 87320 ACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAATCAGACAAGGTGCGGCCGTCTTCC 87261 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 |||||||| || ||||| || | ||||| || ||||| ||||||||||| || ||||| Sbjct 87260 AATTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCTTGG 87201 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || ||||| || ||| | || | | ||| |||| ||| || || | ||||| || ||| Sbjct 87200 ATCTTTTGCTTGACATTGTCGATGGAGTCGGACGATTCGACCTCCAAAGTGATGGTCTTG 87141 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 ||||| || || || ||||| ||||||||| Sbjct 87140 CCGGTCAAGGTCTTGACAAAGATCTGCATG 87111 Score = 132 bits (146), Expect = 4e-26 Identities = 156/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| || || || || ||||| ||||| || ||||| || | || || | | |||| || Sbjct 87093 AACCAAGTGGAGCGTGGATTCCTTTTGAATGTTGTAGTCAGAGAGCGTGCGGCCATCCTC 87034 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 ||||||||| || || || ||||||||||| || || || || |||||||| || ||||| Sbjct 87033 CAATTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTG 86974 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 |||||| || || ||| | || | | ||| |||| ||||| || || |||| || || Sbjct 86973 AATTTTCTGCTTGACATTGTCAATGGAGTCGGACGACTCCACCTCGAGTGTGATGGTCTT 86914 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 ||| || | || || || || || |||||| Sbjct 86913 GCCAGTGAGCGTCTTGACGAAGATTTGCATG 86883 Score = 120 bits (132), Expect = 2e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| || || || || || || ||||| || ||||| || | | || | | | Sbjct 86643 ACGCAGAACCAAGTGCAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAGCGTGCGGCC 86584 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || |||| ||||| || ||||| ||||||||||| |||||||| |||||||| || || Sbjct 86583 GTCCTCCAGCTGCTTGCCGGCAAAAATCAAACGCTGCTGATCGGGGGGAATGCCCTCCTT 86524 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| ||||| || || || | || | || || |||| || || || ||||||| Sbjct 86523 GTCTTGGATTTTCTGCTTGACGTTGTCGATAGAATCGGACGACTCGACCTCCAGAGTGAT 86464 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 || ||||| || | ||| || || || || ||||| || Sbjct 86463 GGTCTTGCCAGTGAGAGTCTTGACGAAAATTTGCATAGT 86425 >seq30 Length=460931 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || ||||||||||| ||||| || |||||||| | | || | | |||| ||| Sbjct 195992 ACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAATCAGACAAGGTGCGGCCATCTTCC 196051 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 |||||||| || ||||| || | ||||| || ||||| || |||||||| || || || Sbjct 196052 AATTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGG 196111 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || ||||| || ||| | || | | || |||| || || || || |||| || ||| Sbjct 196112 ATCTTTTGCTTGACATTATCAATGGAATCCGACGACTCGACCTCGAGCGTGATGGTCTTG 196171 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || ||||| || ||||| |||||||| Sbjct 196172 CCAGTCAAAGTCTTAACAAAGATCTGCAT 196200 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| || || || || ||||| || ||||| || | || || | | | || ||| Sbjct 195764 ACCAAATGCAGCGTGGACTCCTTTTGAATGTTGTAGTCAGAGAGCGTGCGGCCGTCTTCC 195823 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 |||||||| || || || || | ||||| || || || ||||||||||| || |||||| Sbjct 195824 AATTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGA 195883 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || ||||| || ||| | || | | || |||| ||| ||||| | ||||| || ||| Sbjct 195884 ATCTTTTGCTTGACATTGTCGATCGAATCGGACGATTCGACTTCCAAAGTGATGGTCTTG 195943 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || ||||| || ||||| Sbjct 195944 CCAGTGAGCGTCTTGACAAAGATTTGCAT 195972 >seq56 Length=224513 Score = 109 bits (120), Expect = 4e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 || || || ||||| || |||||||| | | || | | |||| ||||||||||| || Sbjct 32457 GTCGACTCCTTTTGGATGTTGTAATCCGACAGCGTGCGGCCATCCTCCAATTGCTTGCCG 32516 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 ||||| || | || || ||||| |||||||| || || || ||||| || ||||| || Sbjct 32517 GCAAAGATGAGTCGTTGCTGATCAGGCGGAATACCCTCCTTGTCTTGGATCTTTTGCTTC 32576 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 ||| | || | | || |||| ||| || ||||| |||| || ||||| || | || Sbjct 32577 ACATTATCAATTGAATCCGACGATTCAACCTCAAGTGTGATGGTCTTGCCAGTGAGCGTC 32636 Query 101453 TTTACAAATATCTGCATG 101470 || || || || |||||| Sbjct 32637 TTGACGAAGATTTGCATG 32654 >seq94 Length=66050 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || || || ||||| ||||| || ||||| || | | || | | |||| ||| Sbjct 22817 ACCAAGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCAGACAACGTGCGGCCATCTTCC 22876 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 |||||||| || || || ||||| ||||| || || || || ||||| || || ||||| Sbjct 22877 AATTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGG 22936 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGA 101412 || ||||| || ||| | || | || |||||| Sbjct 22937 ATCTTTTGCTTGACATTGTCGATAGAGTCAGA 22968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396277680383193