Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq45 125 5e-24 seq30 123 2e-23 seq56 100 2e-16 >seq45 Length=303593 Score = 125 bits (138), Expect = 5e-24 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| || || ||| ||| ||||| || ||||| ||||| || | || Sbjct 86645 AGACGCAGAACCAAGTGCAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAGCGTGCGG 86586 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| |||||||| |||| ||||| ||||| | ||||| ||||||| Sbjct 86585 CCGTCCTCCAGCTGCTTGCCGGCAAAAATCAAACGCTGCTGATCGGGGGGAATGCCCTCC 86526 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || || || || || | | ||| || |||| ||| ||||||| || Sbjct 86525 TTGTCTTGGATTTTCTGCTTGACGTTGTCGATAGAATCGGACGACTCGACCTCCAGAGTG 86466 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || || || || | ||| || || ||||| ||||| ||| Sbjct 86465 ATGGTCTTGCCAGTGAGAGTCTTGACGAAAATTTGCATAGTG 86424 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || | ||| || || || || ||||||||||| | | || |||| ||| Sbjct 87320 ACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAATCAGACAAGGTGCGGCCGTCTTCC 87261 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || ||||| |||||||| || || ||||| || || | ||||| ||| |||||||| Sbjct 87260 AATTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCTTGG 87201 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||||| || ||| | | || || |||| || ||||||| || || || || Sbjct 87200 ATCTTTTGCTTGACATTGTCGATGGAGTCGGACGATTCGACCTCCAAAGTGATGGTCTTG 87141 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || ||||| |||||||| Sbjct 87140 CCGGTCAAGGTCTTGACAAAGATCTGCAT 87112 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || |||||| || ||||| || ||||| ||||| || | || | || || Sbjct 86864 ACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGCGTGCGGCCATCCTCG 86805 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| ||||| || || || ||||| || || | || | ||| |||||||| Sbjct 86804 AGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGG 86745 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||||| || ||| | | || || |||| ||||||||||| || || || || Sbjct 86744 ATCTTTTGCTTGACATTGTCGATGGAATCGGACGACTCCACCTCCAAGGTGATGGTCTTG 86685 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | || || || ||||||||||| Sbjct 86684 CCAGTGAGCGTCTTGACGAAAATCTGCAT 86656 >seq30 Length=460931 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || | |||| ||| ||||| || ||||| ||||| || | || Sbjct 196211 AGACGGAGCACCAAGTGCAACGTGGACTCCTTTTGGATGTTGTAGTCAGACAGCGTGCGG 196270 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| |||||||| || || ||||| || || | ||||| |||||| Sbjct 196271 CCATCCTCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCGGGGGGAATACCCTCC 196330 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||||||| || ||| | | ||| || |||| ||| ||||||| || Sbjct 196331 TTGTCTTGAATCTTTTGCTTGACATTGTCAATAGAGTCCGACGACTCGACCTCCAGAGTG 196390 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | ||| || || ||||| ||||| Sbjct 196391 ATGGTCTTGCCAGTGAGAGTCTTGACGAAAATTTGCAT 196428 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || || ||||| || ||||||||||| | | || | || ||| Sbjct 195992 ACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAATCAGACAAGGTGCGGCCATCTTCC 196051 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || ||||| |||||||| || || ||||| || || | || | ||| |||||||| Sbjct 196052 AATTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGG 196111 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||||| || ||| | | | || || |||| ||| ||||| | ||| || || || Sbjct 196112 ATCTTTTGCTTGACATTATCAATGGAATCCGACGACTCGACCTCGAGCGTGATGGTCTTG 196171 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || ||||| |||||||| Sbjct 196172 CCAGTCAAAGTCTTAACAAAGATCTGCAT 196200 >seq56 Length=224513 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | | |||| ||||| || | ||| ||| ||||| || |||||||| || Sbjct 32426 GCCGCCGCGCAATCGCAGCACCAGGTGCAACGTCGACTCCTTTTGGATGTTGTAATCCGA 32485 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || ||||| ||||| |||||||| || ||||| || ||||| | || Sbjct 32486 CAGCGTGCGGCCATCCTCCAATTGCTTGCCGGCAAAGATGAGTCGTTGCTGATCAGGCGG 32545 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || ||||||||||| |||||||| || ||| | | | || || |||| || || Sbjct 32546 AATACCCTCCTTGTCTTGGATCTTTTGCTTCACATTATCAATTGAATCCGACGATTCAAC 32605 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | || || || || || || | || || || || || ||||| Sbjct 32606 CTCAAGTGTGATGGTCTTGCCAGTGAGCGTCTTGACGAAGATTTGCAT 32653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380936908241127