Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq61 235 1e-56 seq33 178 2e-39 seq65 91.5 3e-13 >seq61 Length=186913 Score = 235 bits (260), Expect = 1e-56 Identities = 833/1291 (65%), Gaps = 38/1291 (3%) Strand=Plus/Plus Query 212960 AGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCAT 213019 |||||||||||||| || ||| ||| || || || || | ||| ||| |||||||| Sbjct 183697 AGTGTAGGGCTCGAAGCACTCATTGAAGCCGAGCATTTGCGACGTGGAGGCGGTGGGCAT 183756 Query 213020 GGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGC 213079 ||| || || || | ||| | || ||||||| | ||| | || || || Sbjct 183757 GGGGGCGACAAGCAATGAGTTGCGGACACCGTGCTGGGCGACCTGTTGCTTGAGAGTGGC 183816 Query 213080 CCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGAT 213139 ||| ||||| ||| || ||||||||||||| || |||| ||||| Sbjct 183817 CCAATCCCAAAGATCAGTGGGGG---------TCACGTTCCACATATCGTACTGGAAGAT 183867 Query 213140 GCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTC 213199 ||| ||| |||||||||||| | || | ||||||||| || | |||| || Sbjct 183868 GCCCTTGGACACGGGGCTGCCTTCATAGGTCTCGTAGGGGCCTTGGACGCGCGCCAATTC 183927 Query 213200 GCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTT 213259 ||| | || || ||| |||| ||| ||||||||||| || | |||||||| |||| Sbjct 183928 CATGGATGTCTCCATGGCGGCGTGGTAAATGGTTTCAAAGATTTGAATGTTGAGCATCTT 183987 Query 213260 GGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGAC 213319 ||| || || ||| || |||| | ||| |||||||| ||||||| Sbjct 183988 GGCTTCCTCCGAGTCGAATGGATAGCGCATGAGCATGAAGGTGTCAGCCAGGCCCTGGAT 184047 Query 213320 CCCGATGCCGATGGGTCTGTGTCTCAGGTTAGA---CTTGGAGCACTCCTCCAAGGGGTA 213376 || | ||| ||||| | ||| | ||||| || || || ||| | |||||| Sbjct 184048 GCCCAAGCCAATGGGGCGGTGGCGAAGGTTGGATCGCTCGGC---CTCAATGACGGGGTA 184104 Query 213377 AAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAG 213436 | | ||| |||||||||||||| | ||||| ||| ||| ||| || ||| || Sbjct 184105 ATAATTGACATCGATGATCTTGTTCAAATTGCGCGTGATCACCTTGACAACCTGGTGCAA 184164 Query 213437 GTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGC 213496 | || | || ||| | || | | || | |||| || |||||||| Sbjct 184165 TTTCTTGAAATCAAACGTCTTGCGGTTGACG---ACGTATGATGGCAACGCAATGCTGGC 184221 Query 213497 CAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTT 213556 || |||||| ||||| | ||| | | | | ||| || | ||||| ||||||| || Sbjct 184222 CAAGTTGCACACGGCAATCTCATCGGGGCTCGAGTATTCGACAATCTCCGTGCACAAATT 184281 Query 213557 GCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCA-GAATCCTTGT 213615 ||||||| ||||||||| |||||||| ||||| || |||||| | ||| | ||||||| Sbjct 184282 GCTGCATTTGATGGTGCCGAGGTTCTGCTGGTTGGA-TTTGCGGTTGCACGCGTCCTTGT 184340 Query 213616 AGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACC 213675 | | ||| | || || ||||| ||||| | | || ||| | ||| | | Sbjct 184341 ACAAGATGAACGGATTGCCCGTCTCGGTCTGGGCCTCGAGAATCGCGTACCACAACTTTT 184400 Query 213676 TGGCCTTGACCACCCGCCTGACAGCTC-CGGGCGTAGCCT---CGTACTGTTCGTAGAGC 213731 ||||||| | | ||| | || | ||| | | ||| |||||| ||| | | Sbjct 184401 GCGCCTTGATC----GTCTGGC-GCGCACGGCCCT--CCTTTTCGTACTTTTCAAACAAG 184453 Query 213732 TCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGA--CAGGATGCGGGACACATGA 213789 | | |||||| | |||||| ||| || || || | | || || || | || Sbjct 184454 GCCTCGAATTCATCGCCCCACACCTCGTGCAAATTGGGCGCCTCGTTGGGG--CAAAAGA 184511 Query 213790 GGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGG 213849 | |||||| || | | ||| | || |||||||| || || ||||| |||||| Sbjct 184512 GCGACCAGTCGCCATTGGCCTCGACACGCTTCATGAACAAATCAGGCACCCAGAGCGCGT 184571 Query 213850 TGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGT 213909 |||| || | | | |||||||| || ||| ||||||| || | |||| Sbjct 184572 AAAACAAATCGCGCGCGCGGATCTCGTCCTTGCCCACGTTCTTGCGCAATTCCAAAAAGG 184631 Query 213910 CAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---C 213966 || ||||| |||||||| ||||| | ||| |||||||| || ||||| | |||| | Sbjct 184632 TGAAAATGTCGGCGTGCCAAGGCTCGAGGTACATGGCAAACGCACCCGGGCGCTTGTTCC 184691 Query 213967 CGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGT 214026 | || ||||| || | ||| ||||||| | |||||| | || | ||| || | Sbjct 184692 CTCCTTGGTCAACGTAGCGCGCCGTGTTGTTGAACACGCGCAGCATAGGCAACAGACCAT 184751 Query 214027 TGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGA 214086 ||| | || ||||| || || || |||||||| | ||| | | |||| ||| | Sbjct 184752 TGGCCGTGCCATTGGTGCCGGCAATGTACGAGCCCGTGGCGCGGATGTTGTGGATGTTCA 184811 Query 214087 GCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGC 214146 || ||||| ||||| ||||||||| || |||| | | | ||||| ||||| Sbjct 184812 AGCCAATGCCGCCGGCCGTCTTGGAGATTTGCGCACAGCACTTGAGCGTCTCGTAGATGC 184871 Query 214147 CGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACG 214206 | | || ||| || | | ||||||||||||| ||| | || || | | || Sbjct 184872 CCTCAATCGAGTCCTCCTTCATAGTCAGCAAGAAGCACGACGACATTTGCGGGCGAGGCG 184931 Query 214207 AGCCAGAGTTGAAAAGCGTGGGGCTGGCATG 214237 ||| | ||||| | ||| ||||| || || Sbjct 184932 TGCCGGCATTGAACAACGTCGGGCTCGCGTG 184962 >seq33 Length=455653 Score = 178 bits (196), Expect = 2e-39 Identities = 350/514 (68%), Gaps = 8/514 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || | ||||||||||| || ||||| |||| | ||||||| || Sbjct 390791 CTGGTAGTCAGAGACACGCTTCTCAAAGAAATTGGTCTTGCCCTGGAGCGAGATGAGGTC 390850 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCC-AGCA 47957 ||| ||| ||||| |||| || || || | |||| | ||| | | |||| Sbjct 390851 CATAAAGTCAAAGGGATTGGTTGCCTTGTAGTGCT-TGTCCTGGCCAAGAGCAACGAGCA 390909 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 || | ||||| || | || ||||||| ||||||| || ||||||||| ||||| | Sbjct 390910 GGCGGTCCGCAACAAATTCAATGTATTGGCACATGAGCTTGGAGTTCATGCCAATGAGCG 390969 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 || |||| || | || || || || | ||| |||| ||||| || | || | Sbjct 390970 CGACAGGCAGCGCGTCGGTCAGGAATTCTTGCTCAATCTTGACGGCCTCGGTGATGATAT 391029 Query 48078 GCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAA 48137 || ||| | || || |||||||||| || | || |||||| ||| |||| Sbjct 391030 CGCGCACACGGTCATTGGAAGGCGTGTTGCGCAGATG---GCCAAAGAGCAGGCACGCAA 391086 Query 48138 AGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCA 48197 ||||| ||||||| || ||||| |||| || ||| |||||||||| | ||||||| Sbjct 391087 AGTCCGTGTGCAAACCCTCGTCACGGCAAATCAGCTCGTTGGAGAACGTCAAGCCAGGCA 391146 Query 48198 TGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCT 48257 | | || | || |||||||| || || | ||| || | ||||||||||| ||||||| Sbjct 391147 TCAAGCCGCGCTTCTTGAGCCAAAAGATGGACGCAAACGCACCAGAGAAGAAAATGCCCT 391206 Query 48258 CCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGG 48317 | || ||||| || || || | || || | | | ||| ||| ||||||||| Sbjct 391207 CAACCGCCGCAAAAGCAACAAGGCGCT---CGGCAAACGTGTTGTTGCTCGAGATCCAGC 391263 Query 48318 AAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 | |||||||| ||||| ||||||||| || Sbjct 391264 GGAATGCCCAGTCGGCCTTGCGCTTGATGCAGGG 391297 >seq65 Length=159763 Score = 91.5 bits (100), Expect = 3e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 212694 AGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATA 212753 ||||||| ||| ||||||||||| ||||| | | | | ||| || |||||||| ||||| Sbjct 94502 AGGTTCATGGATTGACTCTGGTCAATGAACGCGCCGCGGTCCGCAGCCATGTCGATGATC 94561 Query 212754 TCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGA 212808 | | ||| |||| ||||||||| |||||| | | | |||||||| || |||| Sbjct 94562 ACGCGCTGCGAGATCTCCCACACCGTCTTGTACAGCGCCTTGAGGTCGTCGGGGA 94616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931531065020160