Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq33 158 2e-33 seq61 150 3e-31 >seq33 Length=455653 Score = 158 bits (174), Expect = 2e-33 Identities = 343/515 (67%), Gaps = 12/515 (2%) Strand=Plus/Minus Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACG 25869 ||| |||||||| | ||||| ||||| | |||||| ||| | | | ||| Sbjct 391297 CCCTGCATCAAGCGCAAGGCCGACTGGGCATTCCGCTGGATCTCGAGCAACAAC---ACG 391241 Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 |||| |||||| || || || ||||| || || |||||||| || ||| ||| ||||| Sbjct 391240 TTTGCCGAGCGCCTTGTTGCTTTTGCGGCGGTTGAGGGCATTTTCTTCTCTGGTGCGTTT 391181 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAG 25989 ||| ||||||| ||||||||| || || ||||| || || || ||||||||| Sbjct 391180 GCGTCCATCTTTTGGCTCAAGAAGCGCGGCTTGATGCCTGGCTTGACGTTCTCCAACGAG 391121 Query 25990 CTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCAC 26049 || || || | ||||||||| | |||| || ||||| |||||||||| ||||| Sbjct 391120 CTGATTTGCCGTGACGAGGGTTTGCACACGGACTTTGCGTGCCTGCTCT---TTGGCCAT 391064 Query 26050 TTGCTCCACAAACCTTCTCAAGAGACCGTCT--ACAGTATCATCAAAGAGGCTGTGGAGA 26107 ||| | ||| ||||| ||| |||||| | | |||||||| ||||| || ||| Sbjct 391063 CTGCGCAACACGCCTTC-CAA-TGACCGTGTGCGCGATATCATCACCGAGGCCGTCAAGA 391006 Query 26108 TCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGAC 26167 | ||| | || || | | ||||||||| || | Sbjct 391005 TTGAGCAAGAATTCCTGACCGACGCGCTGCCTGTCGCGCTCATTGGCATGAACTCCAAGC 390946 Query 26168 TCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCC 26226 ||||| ||||||||||||| | ||| || |||| ||||| || | || || | | | Sbjct 390945 TCATGTGCCAATACATTGAATTTGTTGCGGACCGCCTGCTCGTTGC-TCTTGGCCAGGAC 390887 Query 26227 AGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAG 26286 | | ||||| | | || || || ||||||||||| ||| ||| | | || ||| Sbjct 390886 AAGCACTACAAGGCAACCAATCCCTTTGACTTTATGGACCTCATCTCGCTCCAGGGCAAG 390827 Query 26287 ACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 ||||| |||||||| ||| | ||| ||||| || Sbjct 390826 ACCAATTTCTTTGAGAAGCGTGTCTCTGACTACCA 390792 >seq61 Length=186913 Score = 150 bits (166), Expect = 3e-31 Identities = 519/799 (65%), Gaps = 19/799 (2%) Strand=Plus/Plus Query 221705 GCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCT 221764 |||| |||||||| ||| |||||||| | ||| || | | | || | | ||||| Sbjct 184211 GCAATGCTGGCCAAGTTGCACACGGCAATCTCATCGGGGCTCGAGTATTCGACAATCTCC 184270 Query 221765 GTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCA 221824 || || | |||||||| |||||||| || |||| | || || || ||||| ||| Sbjct 184271 GTGCACAAATTGCTGCATTTGATGGTGCCGAGGTTCTGCTGGTTGGATTTGCGGTTGCAC 184330 Query 221825 GCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCC 221884 ||||||||||| | || || ||| ||| ||||| ||| ||| | |||||| || | Sbjct 184331 GCGTCCTTGTACAAGATGAACGGATTGCCCGTCTCGGTCTGGGCCTCGAGAATCGCGTAC 184390 Query 221885 CAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCAC---CCTCGGTCTTTTCATACCCG 221941 || | || | |||| | || ||| | |||| |||| |||||| ||| Sbjct 184391 CACAA--CTTTTGCGC-CTTGATCGTCTGGCGCGCACGGCCCTC---CTTTTCGTACT-- 184442 Query 221942 GTATAGAGCATG---TCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGC- 221997 | | | || | || || | || || || |||||| || ||| | ||| | Sbjct 184443 -TTTCAAACAAGGCCTCGAATTCATCGCCCCACACCTCGTGCAAAT-TGGGCGCCTCGTT 184500 Query 221998 GGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGAT 222057 ||| || | || ||||| ||| | | ||| | || |||||| | || || | Sbjct 184501 GGGGCAAAAGAGCGACCAGTCGCCATTGGCCTCGACACGCTTCATGAACAAATCAGGCAC 184560 Query 222058 CCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAG 222117 ||| ||||| | ||| | ||| | | || ||| ||| ||| ||| || | || Sbjct 184561 CCAGAGCGCGTAAAACAAATCGCGCGCGCGGATCTCGTCCTTGCCCACGTTCTTGCGCAA 184620 Query 222118 ATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGG 222177 |||||||| |||||||| |||||||| ||||| || || | ||| | || || || Sbjct 184621 TTCCAAAAAGGTGAAAATGTCGGCGTGCCAAGGCTCGAGGTACATGGCAAACGCACCCGG 184680 Query 222178 TCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGG 222237 |||||||| || || || || || | | || |||||| | ||| || | || Sbjct 184681 GCGCTTGTTCCCTCCTTGGTCAACGTAGCGCGCCGTGTTGTTGAACACGCGCAGCATAGG 184740 Query 222238 TACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTT 222297 | ||| || |||| || |||||||| |||||||| || ||| | | ||| Sbjct 184741 CAACAGACCATTGGCCGTGCCATTGGTGCCGGCAATGTACGAGCCCGTGGCGCGGATGTT 184800 Query 222298 ACTGGCAGA-CATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAG 222356 ||| | || ||| || || ||||| || ||||| || |||| |||||| | Sbjct 184801 G-TGGATGTTCAAGCCAATGCCGCCGGCCGTCTTGGAGATTTGCGCACAGCACTTGAGCG 184859 Query 222357 TGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCT 222416 | || ||||||||| || ||||||||||| | |||||| || || |||||||| | Sbjct 184860 TCTCGTAGATGCCCTCAATCGAGTCCTCCTTCATAGTCAGCAAGAAGCACGACGACATTT 184919 Query 222417 GAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAG 222476 | | | | | ||| || |||| ||| || || ||||| || ||| | | | | Sbjct 184920 GCGGGCGAGGCGTGCCGGCATTGAACAACGTCGGGCTCGCGTGCGTGAAGAATCGCTCCG 184979 Query 222477 ACATCAGATCGTACGTCTC 222495 |||| || | ||||||||| Sbjct 184980 ACATGAGCTGGTACGTCTC 184998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928843070026560