Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq56 102 5e-16 seq30 100 2e-15 seq45 91.5 1e-12 seq27 86.0 4e-11 >seq56 Length=224513 Score = 102 bits (112), Expect = 5e-16 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || ||||| | || || | | ||| || | |||||| || ||||| || || ||||| Sbjct 32475 TTGTAATCCGACAGCGTGCGGCCATCCTCCAATTGCTTGCCGGCAAAGATGAGTCGTTGC 32534 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 |||||||| ||||| || ||||||||||| |||||||| || ||| ||||| | ||| Sbjct 32535 TGATCAGGCGGAATACCCTCCTTGTCTTGGATCTTTTGCTTCACATTATCAATTGAATCC 32594 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | ||||| || || || || || ||||| ||||| ||||| ||||| Sbjct 32595 GACGATTCAACCTCAAGTGTGATGGTCTTGCCAGTGAGCGTCTTGACGAAGATTTG 32650 >seq30 Length=460931 Score = 100 bits (110), Expect = 2e-15 Identities = 159/222 (72%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 ||| |||||||| || | ||| || || ||| |||| ||| || || |||| || Sbjct 195751 ACGGAGACGGAGCACCAAATGCAGCGTGGACTC-CTTTTGAATG-TTGTAGTCAGAGAGC 195808 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 || | | ||||| | |||||| || || ||||| || || || || ||||| ||||| Sbjct 195809 GTGCGGCCGTCTTCCAATTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGGGGAATG 195868 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTC 480727 ||||||||||||||||||||||| |||||| || || | ||| | | | | || | Sbjct 195869 CCTTCCTTGTCTTGAATCTTTTGCTTGACATTGTCGATCGAATCGGACGATTCGACTTCC 195928 Query 480728 AAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || || ||||| ||||| || || ||||| Sbjct 195929 AA-AGTGATGGTCTTGCCAGTGAGCGTCTTGACAAAGATTTG 195969 Score = 100 bits (110), Expect = 2e-15 Identities = 130/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || |||| || || | | ||| || || ||||| || ||||| ||||| || || Sbjct 196250 TTGTAGTCAGACAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGC 196309 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || || || ||||| || |||||||||||||||||||| |||||| ||||||| || Sbjct 196310 TGGTCGGGGGGAATACCCTCCTTGTCTTGAATCTTTTGCTTGACATTGTCAATAGAGTCC 196369 Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | || || || || || || || ||||||||||| ||||||||||| Sbjct 196370 GACGACTCGA-CCTCCAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAAATTTG 196425 Score = 86.0 bits (94), Expect = 4e-11 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || | || || ||| ||| || | || ||||||| | || Sbjct 195979 ACGGAGACGGAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAATCAGACAAGGT 196038 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | |||||| | |||||| || ||||| || || || || || || ||||| || || Sbjct 196039 GCGGCCATCTTCCAATTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGAGGGATGCC 196098 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 ||||||||| || |||||||| |||||| ||||| | ||| Sbjct 196099 TTCCTTGTCCTGGATCTTTTGCTTGACATTATCAATGGAATC 196140 >seq45 Length=303593 Score = 91.5 bits (100), Expect = 1e-12 Identities = 128/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || |||| || || | | ||| || || ||||| || || ||||| || || || Sbjct 86834 TTGTAGTCAGAGAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATGAGGCGCTGC 86775 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || |||||||| || |||||||||||||| |||||||| |||||| || || | ||| Sbjct 86774 TGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTGTCGATGGAATCG 86715 Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | | ||| ||| || || || || ||||| ||||| |||||||| || Sbjct 86714 GACGACTCCACCTCCAA-GGTGATGGTCTTGCCAGTGAGCGTCTTGACGAAAATCTG 86659 >seq27 Length=474733 Score = 86.0 bits (94), Expect = 4e-11 Identities = 154/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 474659 CCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCT 474717 || ||| |||| ||| ||||| || |||| ||||| | ||||| ||| | || || Sbjct 213688 CCCGAAGAAATCTCTGGCATGGTCTTGACCAAGATGAAGGAGACCGCCGAGGCC-TA-CT 213745 Query 474718 TGGACAAGAA-GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAAC 474776 ||| |||| || || |||| || | |||||||| || ||||| || ||| | || | Sbjct 213746 TGGGCAAGCCTGTCACCCATGCTGTCGTCACTGTTCCTGCCTATTTCAACGATGCCCAGC 213805 Query 474777 GTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATG 474836 | || || || || || || || | ||||| || || || | | ||||| || || | Sbjct 213806 GCCAGGCCACCAAGGACGCCGGTACCATTGCTGGCCTCAACATCCTCCGTATCATCAACG 213865 Query 474837 AACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 | || || || || || |||| ||||||||||| ||||| Sbjct 213866 AGCCCACTGCCGCTGCCATTGCCTATGGTCTTGACAAGAA 213905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268172808667052