Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq61 140 4e-28 seq33 113 5e-20 seq5 109 7e-19 seq15 98.7 1e-15 seq65 86.0 7e-12 >seq61 Length=186913 Score = 140 bits (154), Expect = 4e-28 Identities = 863/1368 (63%), Gaps = 28/1368 (2%) Strand=Plus/Minus Query 75222 TGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTCTTGGAGACAT 75281 || ||||||| || || | || ||||| || |||||||||||| | | |||||||| | Sbjct 185051 TGATCATGCGTGTGGCTGTTGGTATCCATGGCGAAGACATTGATGCCGCTTTGGAGACGT 184992 Query 75282 ACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTA 75341 || | ||||| | | | |||| ||||| | || || | |||||||| || | Sbjct 184991 ACCAGCTCATGTCGGAGCGATTCTTCACGCACGCGAGCCCGACGTTGTTCAATGCCGGCA 184932 Query 75342 CACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACG 75401 | || | ||||| ||||| |||||| | | | | ||||||||||| || | | Sbjct 184931 CGCCTCGCCCGCAAATGTCGTCGTGCTTCTTGCTGACTATGAAGGAGGACTCGATTGAGG 184872 Query 75402 GTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGA 75461 | ||||| | || || | | |||||||||||||| ||| ||| || || ||||| Sbjct 184871 GCATCTACGAGACGCTCAAGTGCTGTGCGCAAATCTCCAAGACGGCCGGCGGCATTGGCT 184812 Query 75462 TGCACATCCATGATGTGAGAGCCAATAAATCTCGT--ATTCGGGGGACAAATGGTCAATC 75519 || ||||||| | | | |||| ||||| ||| || || ||||| | Sbjct 184811 TGAACATCCACAACATCCGCGCCA--CGGGCTCGTACATTGCCGGCACCAATGGCACGGC 184754 Query 75520 AGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGC 75579 ||||| | | || ||||| ||||| || ||| ||| |||||||| || | |||| Sbjct 184753 CAATGGTCTGTTGCCTATGCTGCGCGTGTTCAACAACACGGCGCGCTACGTTGACCAAGG 184694 Query 75580 GGGG---CGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGCCGATATCAT 75636 ||| ||| ||| | | || | ||| | || || ||||| ||||| || | Sbjct 184693 AGGGAACAAGCGCCCGGGTGCGTTTGCCATGTACCTCGAGCCTTGGCACGCCGACATTTT 184634 Query 75637 GGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTT 75696 || | || || || ||| || | || ||| || | ||| | || Sbjct 184633 CACCTTTTTGGAATTGCGCAAGAACGTGGGCAAGGACGAGATCCGCGCGCGCGATTTGTT 184574 Query 75697 TTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTC 75756 || | || ||| | || || | ||||||||||| || |||| ||| | ||||| Sbjct 184573 TTACGCGCTCTGGGTGCCTGATTTGTTCATGAAGCGTGTCGAGGCCAATGGCGACTGGTC 184514 Query 75757 TCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGC 75816 || || || || || |||| || | | ||| | | ||| || || || || || Sbjct 184513 GCTCTTTTGCCCCAACGAGGCGCCCAATTTGCACGAGGTGTGGGGCGATGAATTCGAGGC 184454 Query 75817 CCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCAGCCGCCGATGT 75876 | | | |||||| ||| ||||||| | || ||| | | || ||| | || Sbjct 184453 CTTGTTTGAAAAGTACGAAAAGGAGGGCCGTGCGCGCCAGAC-GATCAAGGCGCAAAAGT 184395 Query 75877 T-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGG 75935 | ||| | || |||||| | | ||||| ||||| || | || | || | ||||||| Sbjct 184394 TGTGGTACGCGATTCTCGAGGCCCAGACCGAGACGGGCAATCCGTTCATCTTGTACAAGG 184335 Query 75936 ATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTT 75995 | || || ||| || ||||| |||| | || || ||||| || ||| | | Sbjct 184334 ACGCGTGCAACCGCAAATCCAACCAGCAGAACCTCGGCACCATCAAATGCAGCAATTTGT 184275 Query 75996 GCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAA 76055 ||||||| ||| | || ||| | ||||||| || || ||||| ||||| | Sbjct 184274 GCACGGAGATTGTCGAATACTCGAGCCCCGATGAGATTGCCGTGTGCAACTTGGCCAGCA 184215 Query 76056 TCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATG 76115 | || | ||| || ||| | || | | | || ||||||| | ||| | || Sbjct 184214 TTGCGTTGCCATCATACGTC-GTCAACCG-CAAG-ACGTTTGATTTCAAGAAATTGCACC 184158 Query 76116 AAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCG 76175 | | ||| | | || ||| | ||| |||| || |||| ||| |||| Sbjct 184157 AGGTTGTCAAGGTGATCACGCGCAATTTGAACAAGATCATCGATGTCAATTATTACCCCG 184098 Query 76176 ---TTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAG 76232 ||||| | | |||| || || | || ||| | || ||||| ||||| | || | Sbjct 184097 TCATTGAGGCCGAGCGA---TCCAACCTTCGCCACCGCCCCATTGGCTTGGGCATCCAGG 184041 Query 76233 GTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGA 76292 | || || || || || | ||||| |||| || || || ||||||||| | Sbjct 184040 GCCTGGCTGACACCTTCATGCTCATGCGCTATCCATTCGACTCGGAGGAAGCCAAGATGC 183981 Query 76293 TGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGG 76352 | || || |||||||||||||| || ||||| || ||||| | ||||||| Sbjct 183980 TCAACATTCAAATCTTTGAAACCATTTACCACGCCGCCATGGAGACATCCATGGAATTGG 183921 Query 76353 CTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTT- 76411 | | |||||| |||| ||||| | ||| || |||| || ||||||| ||| Sbjct 183920 CGCGCGTCCAAGGCCCCTACGAGACCTATGAAGGCAGCCCCGTGT-CCAAGGGCATCTTC 183862 Query 76412 CAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAAC--TACGACTGGGATGTTCTCAAGG 76469 |||| ||||||| |||| |||| || | || | | | || |||| ||||||| Sbjct 183861 CAGTACGATATGT-GGAACGTGACCCCCA-CTGATCTTTGGGATTGGGCCACTCTCAAGC 183804 Query 76470 AACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTT--TGATGGCACCAATGCCAACAGC 76527 ||| || || | ||| | || ||| || || | | || || ||||| || || Sbjct 183803 AACAGGTCGCCCAGCACGGTGTCCGCAAC--TCATTGCTTGTCGCCCCCATGCCCACCGC 183746 Query 76528 CTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACAC 76575 |||||| | ||||| | || ||||| ||||| || || ||||| Sbjct 183745 CTCCACGTCGCAAATGCTCGGCTTCAATGAGTGCTTCGAGCCCTACAC 183698 >seq33 Length=455653 Score = 113 bits (124), Expect = 5e-20 Identities = 296/441 (67%), Gaps = 8/441 (2%) Strand=Plus/Minus Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130 || |||||||||||| |||| |||||| || ||||| || |||||||| || | || Sbjct 391240 TTTGCCGAGCGCCTTGTTGCTTTTGCGGCGGTTGAGGGCATTTTCTTCTCTGGTGCGTT- 391182 Query 65131 TGCG-CTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||| | || | |||| | |||||||| || | ||||| ||| | ||||| || || Sbjct 391181 TGCGTCCATCTTTTGGCTCAAGAAGCGCGGCTTGATGCCTGGCTTGACGTTCTCCAACGA 391122 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTG-GAGCTCTTCAAGACTT 65248 || |||| ||| || |||||| | ||| ||| |||| |||| |||||| | Sbjct 391121 GCTGATTTGCCGTGACGAGGGTTTGCACACGGACTTTG-CGTGCCTGCTCTTTGGCCATC 391063 Query 65249 TGCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTG 65308 |||| || | || | | || | | | || ||| | | ||||| || |||||| Sbjct 391062 TGCGCAACACGCCTTCCAATGACCGTGTGCGCGATATCATCACCGAGGCCGTCAAGATTG 391003 Query 65309 AGAAAGGGTTCATCTTGGACGCACTCCCATGT-AATCTCATCGGTATGAACTCTGAGAAG 65367 || ||| ||| | ||||| || || ||| ||||| || |||||||| || Sbjct 391002 AGCAAGAATTCCTGACCGACGCGCTGCC-TGTCGCGCTCATTGGCATGAACTCCAAGCTC 390944 Query 65368 ATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGG-GGTGCCACC 65426 |||| | | |||||||| | ||| |||| || || ||| |||| | || Sbjct 390943 ATGTGCCAATACATTGAATTTGTTGCGGACCGCCTGCTCGTTGCTCTTGGCCAGGACAAG 390884 Query 65427 CATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGAC 65486 || | || || | ||||| |||||||||||||| ||| || | || ||||| Sbjct 390883 CA-CTACAAGGCAACCAATCCCTTTGACTTTATGGACCTCATCTCGCTCCAGGGCAAGAC 390825 Query 65487 CAACTTCTTTGAGAAGCGAGT 65507 ||| |||||||||||||| || Sbjct 390824 CAATTTCTTTGAGAAGCGTGT 390804 >seq5 Length=887111 Score = 109 bits (120), Expect = 7e-19 Identities = 266/399 (67%), Gaps = 12/399 (3%) Strand=Plus/Minus Query 177573 CACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGCCTCTTCTTGTTGAAGCAT 177632 ||||| ||| ||||| ||||| || | ||| | || || | ||| || || || ||||| Sbjct 16781 CACAGTGTGGGTCTCGCCCGTGGCAAGGACAAAGTCTTCGGGCTCGTCCTGCTGGAGCAT 16722 Query 177633 GAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTCTGGCAGCGTTGAGGTT 177692 |||||||||| | || || ||||||||||| || ||||| || | |||| | ||| Sbjct 16721 GAGCCACATGCCCTCGACGTAGTCCTTGGCGTGGCCCCAATCGCGCTTGGCGTCAATGTT 16662 Query 177693 ACCGAGTTCAAGGAACTCTCTCTC-ACCTTTCACAATTTGTTT--GACGCCATCAG---T 177746 || | | | | | || || | ||| ||| | | | | || || || | Sbjct 16661 GCCCAAATACAAGCATTC-CTGGCGACC-----CAAGTGGATGTCGGCGACAGCACGGCT 16608 Query 177747 AATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTGAAGAGGATTCC 177806 ||||| ||||||||| | || || | || || |||||||| || ||||| || Sbjct 16607 GATCTTGCGGGTGACAAAGGTGCGGCCACGGCGGGGAGACTCGTGGTTAAACAGGATGCC 16548 Query 177807 GGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGACGAGCCAGTGAGCGGCCAA 177866 ||| || ||||| ||||| || ||||| || ||||| ||||| | || Sbjct 16547 ATTGCACGCGTACATGTTGTAGGACTCGCGGTAGTTGACGACGATCCAGTAGCCATACAG 16488 Query 177867 TTTGGAGACGCCATAGACGGATCGTGGGTAGAAGGGTGTCTCCTCAGTTTGTGGAGTTTC 177926 |||| || |||||| || || ||||||||||| || ||| |||| ||||| || Sbjct 16487 CTTGGCAACACCATAGGGCGAGCGAGGGTAGAAGGGCGTGGTCTCCTTTTGGGGAGTCTC 16428 Query 177927 TCGGACTTTACCAAACATCTCCGAAGTTGAGGCTTGGTA 177965 || || ||| ||| ||| || || ||||||||||| Sbjct 16427 GACAACCTTGCCATACAGCTCAGAGGTGGAGGCTTGGTA 16389 >seq15 Length=628964 Score = 98.7 bits (108), Expect = 1e-15 Identities = 263/398 (66%), Gaps = 12/398 (3%) Strand=Plus/Minus Query 177574 ACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGCCTCTTCTTGTTGAAGCATG 177633 |||| |||||| || ||||| || | |||| | || || | ||| || || || |||||| Sbjct 137926 ACAGTGTGTGTTTCGCCCGTGGCCAGAACAAAGTCTTCGGGCTCGTCCTGCTGGAGCATG 137867 Query 177634 AGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTCTGGCAGCGTTGAGGTT- 177692 ||||||||| | || || ||||||||||| || ||||| || | |||| | ||| Sbjct 137866 AGCCACATGCCCTCGACGTAGTCCTTGGCGTGGCCCCAATCGCGCTTGGCGTCAATGTTG 137807 Query 177693 ACCGAGTTCAAGGAACTCTCTCTCACCTTTCACAATTTG--TTTGACGCCATCA---GTA 177747 || | | |||| | || | ||| ||| | | | | || || || | Sbjct 137806 CCCAAATACAAGCATTCCTGGC-GACC-----CAAGTGGATGTCGGCGACAGCACGGCTG 137753 Query 177748 ATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTGAAGAGGATTCCG 177807 ||||| ||||||||| | || || | || || ||||||||||| ||||| || Sbjct 137752 ATCTTGCGGGTGACAAAGGTGCGGCCACGGCGGGGAGACTCGTGGTTGAACAGGATGCCA 137693 Query 177808 GAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGACGAGCCAGTGAGCGGCCAAT 177867 ||| || ||||| |||||||| |||||||| ||||| |||| | || Sbjct 137692 TTGCACGCGTACATGTTGTAGGATTCGCGGTAATTGACGACGATCCAGAAGCCATACAGC 137633 Query 177868 TTGGAGACGCCATAGACGGATCGTGGGTAGAAGGGTGTCTCCTCAGTTTGTGGAGTTTCT 177927 |||| || |||||| || || || || ||||| || ||| |||| || || || Sbjct 137632 TTGGCAACACCATAGGGCGAGCGAGGATAAAAGGGCGTAGTCTCCTTTTGGGGCGTCTCG 137573 Query 177928 CGGACTTTACCAAACATCTCCGAAGTTGAGGCTTGGTA 177965 ||| || || ||| ||||| || || || ||||| Sbjct 137572 ACGACCTTGCCGTACAATTCCGACGTGGACGCCTGGTA 137535 >seq65 Length=159763 Score = 86.0 bits (94), Expect = 7e-12 Identities = 130/184 (71%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 ||| ||| | ||| ||||||| || || | ||||||||||| ||||| | || | | Sbjct 96659 CCCGCAGCATATGGTCATGCGTGTTGCCCTTGGCATCCACGGCAAAGACCTGGACGCCGC 96600 Query 75271 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATT---CACGCAACACCAACCCT 75327 ||| |||| || ||| ||||| | | | |||| || || || || |||||||| Sbjct 96599 CTTCCAGACCTATGACCTCATGTCTC---GCAAGTTCTTTACCCATGCCACCCCAACCCT 96543 Query 75328 CTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGA 75387 ||||||||| || || || | || || |||||||||||| ||| || || ||||| Sbjct 96542 CTTCAATGCAGGCACCCCGCGCCCTCAATTGTCCAGTTGCTACCTGGTCAACATGAAGGA 96483 Query 75388 GGAC 75391 ||| Sbjct 96482 TGAC 96479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596568488889120