Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq11 223 5e-52 seq61 214 3e-49 seq5 208 1e-47 seq33 154 2e-31 seq65 143 4e-28 seq92 129 9e-24 >seq11 Length=680710 Score = 223 bits (246), Expect = 5e-52 Identities = 205/257 (80%), Gaps = 2/257 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| || || |||||||||||| |||||| ||| ||| | | Sbjct 368536 TGTACTTGGTGACGGCCTTGGTGCCTTCCGAGACGGCGTGCTTGGCCAATTCACCGGGGA 368595 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||||| ||| |||||||||||||||||||| | | ||| ||| ||||||||| || Sbjct 368596 GGATCAAGCGGACGGCGGTCTGGATCTCGCGCGAGGAGATGGTGGAGCGCTTGTT-GTAG 368654 Query 1485590 GC-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || || || | |||||||||| | ||||| || | ||||| |||||||||||||| Sbjct 368655 GCAGCGAGCTTGGAGGCCTCGGTGGCAATGCGCTCAAAGATGTCATTGACAAACGAGTTG 368714 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 | ||| ||||| | ||||||||||| || ||| ||||| |||||||||||||||||| Sbjct 368715 AGGATGGACATGGCCTTGTTGGAGATACCAGTGTCAGGGTGGACCTGCTTGAGCACCTTG 368774 Query 1485709 TAAACAAAGGACGAGTA 1485725 || | | |||||||| Sbjct 368775 TAGATGTACGACGAGTA 368791 Score = 102 bits (112), Expect = 1e-15 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 2035638 TTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACC 2035697 ||| ||| |||||||| ||||| || || ||||| | | || |||| |||||||| Sbjct 292399 TTGTTCCAGGCCGCCAATTACCTTGATATTAAGCCATTGTTGGACGTGGGCTGCAAGACG 292458 Query 2035698 GTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753 ||||||||| | |||||||||||| | ||||||| |||||||||| ||| ||||| Sbjct 292459 GTGGCCAACATGATCAAGGGCAAGACTGCCGAGGAAATCCGCAAGATCTTCAACAT 292514 >seq61 Length=186913 Score = 214 bits (236), Expect = 3e-49 Identities = 205/263 (78%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 ||||| || ||||||||||||| ||| || ||||| ||||| |||| || || |||| | Sbjct 184697 TGGTCAACGTAGCGCGCCGTGTTGTTGAACACGCGCAGCATAGGCAACAGACCATTGGCC 184756 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 ||| |||||||| || | ||| | ||||| |||||| | ||||| | ||||| Sbjct 184757 GTGCCATTGGTGCCGGCAATGTACGAGCCCGTGGCGCGGATGTTGTGGATGTTCAAGCCA 184816 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 ||||||||||||| ||||||||| |||| || || |||||||||||||||||||| Sbjct 184817 ATGCCGCCGGCCGTCTTGGAGATTTGCGCACAGCACTTGAGCGTCTCGTAGATGCCCTCA 184876 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 |||||||| ||||||| || || ||||||||||| |||||||||| | ||||||| Sbjct 184877 ATCGAGTCCTCCTTCATAGTCAGCAAGAAGCACGACGACATTTGCGGGCGAGGCGTGCCG 184936 Query 2073781 GCATTGAAGAGCGTGGGCGTCGC 2073803 |||||||| | ||| || |||| Sbjct 184937 GCATTGAACAACGTCGGGCTCGC 184959 Score = 113 bits (124), Expect = 7e-19 Identities = 154/213 (72%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 2071794 CTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCAC 2071853 |||||||| |||||||||| ||||||||||||||||||||||| | | | || Sbjct 184477 CTCGTGCAAATTGGGCGCCTCGTTGGGGCAAAAGAGCGACCAGTCGCCATTGGCCTCGAC 184536 Query 2071854 GCGGCGCATAAACAGGTC--GCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTC 2071911 || ||| |||| || |||| ||| || ||||||| | ||||||||| ||| || Sbjct 184537 ACGCTTCATGAACAAATCAGGCAC--CCAGAGCGCGTAAAACAAATCGCGCGCGCGGATC 184594 Query 2071912 TCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGC 2071971 || |||||||| |||||| || || | || || | |||||||||||| ||| Sbjct 184595 TCGTCCTTGCCCACGTTCTTGCGCAATTCCAAAAAGGTGAAAATGTCGGCGTGCCAAGGC 184654 Query 2071972 TCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTG 2072004 || ||||| |||||| || ||| ||||||| Sbjct 184655 TCGAGGTACATGGCAAACGCACCCGGGCGCTTG 184687 Score = 87.8 bits (96), Expect = 3e-11 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 2069251 TGGTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCG 2069310 ||||| ||||| |||| |||||||| | |||| || || ||||||| ||||||||||||| Sbjct 183128 TGGTCAACGGTGAACTTGATGGCGTCGACGGCGGGACGCGTGCGCAAATAGTACATGCCG 183187 Query 2069311 GTCTTGAGGCC 2069321 ||||||||||| Sbjct 183188 GTCTTGAGGCC 183198 >seq5 Length=887111 Score = 208 bits (230), Expect = 1e-47 Identities = 193/242 (80%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| || || |||||||||||| |||||| ||| || | | Sbjct 6140 TGTACTTGGTGACGGCCTTGGTGCCTTCCGAGACGGCGTGCTTGGCCAATTCACCAGGGA 6081 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||||| ||| || || |||||||||||||| | | ||| ||| ||||||||| || Sbjct 6080 GGATCAAGCGGACAGCAGTCTGGATCTCGCGAGAGGAGATGGTGGAGCGCTTGTT-GTAG 6022 Query 1485590 GC-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || || || | |||||||||| ||||||| || | ||||| |||||||| ||||| Sbjct 6021 GCAGCGAGCTTGGAGGCCTCGGTGGCGATGCGCTCAAAGATGTCATTGACAAAGGAGTTG 5962 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 | ||| ||||| | ||||||||||| || ||||||||| |||||||||||||||||| Sbjct 5961 AGGATGGACATGGCCTTGTTGGAGATACCAGTGTCGGGGTGGACCTGCTTGAGCACCTTG 5902 Query 1485709 TA 1485710 || Sbjct 5901 TA 5900 >seq33 Length=455653 Score = 154 bits (170), Expect = 2e-31 Identities = 171/226 (76%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 793917 ACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAAC 793976 || ||| ||| || || ||||||||||||| ||||||||| | ||||| | || Sbjct 390804 ACACGCTTCTCAAAGAAATTGGTCTTGCCCTGGAGCGAGATGAGGTCCATAAAGTCAAAG 390863 Query 793977 GGGTTGGCCGTCAGGTAGTGCTTCTC--GCACCCGAGCGACGCAAGCAGGCGGTCGGCGA 794034 || |||| | | ||||||||| || | | |||| ||| ||||||||||| || | Sbjct 390864 GGATTGGTTGCCTTGTAGTGCTTGTCCTGGCCAAGAGCAACG--AGCAGGCGGTCCGCAA 390921 Query 794035 CGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCG 794094 | ||||||||||| ||||||||||| || ||||||||| |||||||| || ||||||| Sbjct 390922 CAAATTCAATGTATTGGCACATGAGCTTGGAGTTCATGCCAATGAGCGCGACAGGCAGCG 390981 Query 794095 ACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGAT 794140 ||| | | || |||| ||| |||| |||||||||| ||||||| Sbjct 390982 CGTCGGTCAGGAATTCTTGCTCAATCTTGACGGCCTCGGTGATGAT 391027 Score = 96.9 bits (106), Expect = 5e-14 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| || | |||| |||||| || | ||| ||||| | ||||||||| Sbjct 391100 ACCCTCGTCACGGCAAATCAGCTCGTTGGAGAACGTCAAGCCAGGCATCAAGCCGCGCTT 391159 Query 794400 CTTGAGCCAAAAGATGGCACAGAAAC-TGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 794458 ||||||||||||||||| || |||| || ||||| || |||||||| || || |||| Sbjct 391160 CTTGAGCCAAAAGATGG-ACGCAAACGCACCAGAGAAGAAAATGCCCTCAACCGCCGCAA 391218 Query 794459 AGCCGACGAGCCGCTCGGCAAAAGTGT 794485 | | || || ||||||||||| |||| Sbjct 391219 AAGCAACAAGGCGCTCGGCAAACGTGT 391245 Score = 86.0 bits (94), Expect = 1e-10 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 794548 GTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATG 794607 || || ||||| ||| || | ||||| ||||| | ||||||| |||||| || ||| Sbjct 391373 GTCTCAATGGCATCAAAAAGATTCTCCTTTTCGACGGCATCCTTGATGTAGGTATCAATG 391432 Query 794608 AGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCAG 794667 || | ||||||||| |||||||| || || || ||| ||||||||||||||||| Sbjct 391433 AGCAAGCTGTAGGTCTCGGAGTGGATATTCTCAATCATGATTTGGAAGCCATAAAAGCAC 391492 Query 794668 TT 794669 || Sbjct 391493 TT 391494 >seq65 Length=159763 Score = 143 bits (158), Expect = 4e-28 Identities = 176/239 (74%), Gaps = 6/239 (3%) Strand=Plus/Plus Query 2069251 TGGTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCG 2069310 ||||||||||| |||| |||||||| | |||| || |||| |||||| ||||||||||| Sbjct 94370 TGGTCGACGGTGAACTTGATGGCGTCGACGGCGGGGCGGGAGCGCAGGTAGTACATGCCC 94429 Query 2069311 GTCTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGCA---TTC 2069367 ||||||||||| ||| || || |||||| ||||||| || | || | Sbjct 94430 GTCTTGAGGCCCTTTTTCCAGGCATAAAAGTGCATGGACGTGA---GCTTGCCAACGGTG 94486 Query 2069368 GGGACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCC 2069427 ||| || | | | ||||| | || || |||||||| | | | ||||||| || Sbjct 94487 GGGTCGCTGCTGAACAGGTTCATGGATTGACTCTGGTCAATGAACGCGCCGCGGTCCGCA 94546 Query 2069428 GCCATGTCGATGGTCACGCGGTTGGACACCTCCCACACGGTCTTGAACAGGGCCTTGAG 2069486 |||||||||||| ||||||| | || | ||||||||| |||||| |||| |||||||| Sbjct 94547 GCCATGTCGATGATCACGCGCTGCGAGATCTCCCACACCGTCTTGTACAGCGCCTTGAG 94605 Score = 93.3 bits (102), Expect = 7e-13 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 2073547 ACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGACTCGCCG 2073606 ||| |||||||||| || || | ||||| | ||||||||||| ||| |||||| ||| Sbjct 96219 ACAAAGCGCGCCGTATCATTGTACACGCGCAACATGGGCACAATGCCATTGGACGTGCCA 96278 Query 2073607 TTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCGATGCCG 2073666 || || || || | ||| | || ||| ||| | ||| || | | | ||| | || Sbjct 96279 TTTGTCCCGGCAATGTACGACCCGGAGCTGCGAATCTTTTGGAAGCCCACGCCCACACCA 96338 Query 2073667 CCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCGAT 2073722 || || | |||||||||| || ||| | ||| ||| |||||||||||||| || Sbjct 96339 CCAGCAGACTTGGAGATGCATGCACACGTCATCAACGTGTCGTAGATGCCCTCAAT 96394 Score = 86.0 bits (94), Expect = 1e-10 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 2069617 AAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTG-ATGACCTCGCACGCCTC 2069675 || ||||| ||| || || || |||||||||||||| ||| ||| ||| | ||| Sbjct 94975 AACTCGCCGCTGAGGACACGACGAGTGTAGATGTTGCTTGTGTATG-GCTCAAAACACTC 95033 Query 2069676 GGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCAGCGAGTT 2069735 ||||||| |||||||| || | || ||||||||| | || ||||| ||||| || Sbjct 95034 ATTGTTGCCGAGGATCTGGCTTGTGCTTGCAGTGGGCATGGGTGCGACGAGGAGCGAATT 95093 Query 2069736 GCGCAGGCCGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCCCAGCG 2069786 ||||| |||| || || | | || ||||||||||| |||||||| Sbjct 95094 GCGCACACCGTGTTGCATGACGCGGGTGCGGAGGGCGTCCCAATCCCAGCG 95144 >seq92 Length=68636 Score = 129 bits (142), Expect = 9e-24 Identities = 207/292 (71%), Gaps = 9/292 (3%) Strand=Plus/Plus Query 2411386 TCAATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGTCCTTGGTGAGGCCCGGCACC 2411445 || ||||||||| ||| ||| | | ||||||| || ||| ||||| || ||| Sbjct 30109 TCGATCTTGGAGTCGGGATCGGACGAGGACATCTTGACGCCCTGC---AGGCCAGGGACC 30165 Query 2411446 AGCGGGTTGAGCAGGTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGGTGGTCGCGCGCA 2411505 | ||||| | || |||| |||||| |||||| ||| ||||||| | || Sbjct 30166 ATGGGGTTCATCAAGTGGGCGCGCTTCTCGTAGCCGAGCATGGGCAGGTATTTTTCGGCC 30225 Query 2411506 AAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGC 2411565 | | |||||||||||||||||||| ||||| || || ||||||| || |||| ||| Sbjct 30226 ATGACAAAGATCTTGCGCTGGTCGACGCCGCCGAATTGCACGTCGACATCCAGGTATTGC 30285 Query 2411566 TCGTCGAGGGCCTGCATGAGCGGGTAGACGAGGTTGCTGAGCGGCGGGTTGCG-GTCCAT 2411624 ||||| |||||||||||| ||||| | |||||| ||| | |||| || | || Sbjct 30286 TCGTCCAGGGCCTGCATGCCGGGGTAAAGCAGGTTGGACAGCAG-GGGTGACGCGACCTG 30344 Query 2411625 CTTGACCACCTGGGCGGCGGCCTT--TTGCGCCGTGCCGACGGTCACGCGCG 2411674 |||||| |||| ||| ||||||| |||| ||||| | |||||| ||| Sbjct 30345 CTTGACAACCTCGGCACCGGCCTTGCGTGCGTCGTGC--TCCGTCACGAGCG 30394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916230550190411