Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq45 107 2e-18 seq30 105 5e-18 seq56 87.8 1e-12 >seq45 Length=303593 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||| ||||| ||| | || ||||| ||||| || | || ||| | | Sbjct 86428 ATGCAAATTTTCGTCAAGACTCTCACTGGCAAGACCATCACTCTGGAGGTCGAGTCGTCC 86487 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||| || ||| | | || || || || || || || || ||| | ||| |||||| Sbjct 86488 GATTCTATCGACAACGTCAAGCAGAAAATCCAAGACAAGGAGGGCATTCCCCCCGATCAG 86547 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | | |||| ||| || || ||||||||||||| | || || | ||||||||| Sbjct 86548 CAGCGTTTGATTTTTGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGTCTGACTACAAC 86607 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 || ||||||||||| || ||||| |||| Sbjct 86608 ATCCAAAAGGAGTCCACTCTGCACTTGGT 86636 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| ||||| || | || ||||| ||||| ||| | || |||| | | Sbjct 86656 ATGCAGATTTTCGTCAAGACGCTCACTGGCAAGACCATCACCTTGGAGGTGGAGTCGTCC 86715 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||| | ||| | | || || |||||||| || || |||||| | || || ||| Sbjct 86716 GATTCCATCGACAATGTCAAGCAAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAG 86775 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || |||| || || || ||||| ||||| | | || | | ||||||||| Sbjct 86776 CAGCGCCTCATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCTCTGACTACAAC 86835 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 || |||||||| || ||| | ||| |||| Sbjct 86836 ATCCAAAAGGAATCCACGCTCCACTTGGT 86864 >seq30 Length=460931 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||||||||| ||||| ||| | || ||||| ||||| || | || ||| | Sbjct 196431 AACATGCAAATTTTCGTCAAGACTCTCACTGGCAAGACCATCACTCTGGAGGTCGAGTCG 196372 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 || || | | | | || || ||||||||| || || || || | ||| || Sbjct 196371 TCGGACTCTATTGACAATGTCAAGCAAAAGATTCAAGACAAGGAGGGTATTCCCCCCGAC 196312 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | ||||| | ||| || || ||||| ||||| | | || || | |||||| Sbjct 196311 CAGCAGCGCCTTATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTGTCTGACTAC 196252 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| ||||||||||| ||||||||| ||||| Sbjct 196251 AACATCCAAAAGGAGTCCACGTTGCACTTGGTG 196219 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| |||||||| || | || ||||| ||||| || | ||| || | | Sbjct 195972 ATGCAAATCTTTGTCAAGACGCTCACTGGCAAGACCATCACTTTGGAAGTCGAATCGTCC 195913 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||| | ||| | | || || ||||||||| || || |||||| | ||| || ||| Sbjct 195912 GATTCGATCGACAATGTCAAGCAAAAGATTCAAGACAAGGAAGGCATTCCCCCTGACCAG 195853 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || |||| || || || || |||| |||| | || | | ||||||||| Sbjct 195852 CAGCGCCTCATTTTCGCCGGCAAGCAATTGGAAGACGGCCGCACGCTCTCTGACTACAAC 195793 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||||||||||| ||| |||| ||||| Sbjct 195792 ATTCAAAAGGAGTCCACGCTGCATTTGGTG 195763 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| ||||| || ||||| ||||| ||| |||| ||| | Sbjct 195744 ATGCAGATCTTTGTCAAGACTTTGACTGGCAAGACCATCACCCTCGAGGTCGAGTCGTCG 195685 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||| | ||| | | || || |||||||| || || ||||| | || || ||| Sbjct 195684 GATTCCATCGACAATGTCAAGCAAAAGATCCAGGACAAGGAAGGTATCCCTCCCGACCAG 195625 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | ||||| | ||| || || ||||| ||||| | | || || | ||||||||| Sbjct 195624 CAGCGCCTTATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTGTCCGACTACAAC 195565 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 || |||||||| || ||| | ||| |||| Sbjct 195564 ATCCAAAAGGAATCCACGCTCCACTTGGT 195536 >seq56 Length=224513 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729 |||||||| |||| || | ||| || || || ||||||| | | || || |||| Sbjct 32539 GATCAGCAACGACTCATCTTTGCCGGCAAGCAATTGGAGGATGGCCGCACGCTGTCGGAT 32480 Query 107730 TACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||||| ||||||||||| ||||||||| ||||| || ||||||| || || Sbjct 32479 TACAACATCCAAAAGGAGTCGACGTTGCACCTGGTGCTGCGATTGCGCGGCGG 32427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398876075664661