Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq45 129 4e-25 seq56 93.3 3e-14 seq30 93.3 3e-14 >seq45 Length=303593 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || || | ||||| || || ||| || ||||| |||||||| || ||| Sbjct 87110 CCACCGCGCAGGCGGAGAACCAAGTGGAGCGTGGATTCCTTTTGAATGTTGTAGTCAGAG 87051 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||||||| || ||||| ||||||||||||||||| || | || Sbjct 87050 AGCGTGCGGCCATCCTCCAATTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGG 86991 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| ||||||||| || |||| ||| | || |||| || ||||| Sbjct 86990 ATGCCTTCCTTGTCTTGAATTTTCTGCTT-GACATTGTCAATGGAGTCGGACGACTCCAC 86932 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | ||| || || ||||| ||||| Sbjct 86931 CTCGAGTGTGATGGTCTTGCCAGTGAGCGTCTTGACGAAGATTTGCAT 86884 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || || ||| || ||||| |||||||| ||||| || ||||| |||| ||| Sbjct 87548 ACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGCGTGCGGCCGTCTTCC 87489 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 |||||||| |||||||| || | ||||| || || | || | ||||| ||||| Sbjct 87488 AATTGTTTGCCGGCAAAGATGAGGCGCTGTTGGTCGGGAGGGATGCCTTCCTTGTCTTGG 87429 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || || || |||| ||| | || ||| ||||| || || | ||||| || || Sbjct 87428 ATCTTTTGCTT-GACATTGTCGATGGAATCGGACGATTCGACCTCCAAAGTGATGGTCTT 87370 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || || || |||||||||||||| Sbjct 87369 GCCGGTCAAGGTCTTGACAAAGATCTGCAT 87340 Score = 109 bits (120), Expect = 4e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || |||||| ||| ||||| |||||||| || || Sbjct 86655 ACCACCACGGAGACGCAGAACCAAGTGCAGAGTGGACTCCTTTTGGATGTTGTAGTCAGA 86596 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| |||| |||| || || |||||||||||||||||||||||||| | || Sbjct 86595 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAAATCAAACGCTGCTGATCGGGGGG 86536 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| |||||||| || || | ||| | | ||| || || | Sbjct 86535 AATGCCCTCCTTGTCTTGGATTTTCTGCTT-GACGTTGTCGATAGAATCGGACGACTCGA 86477 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 | || | ||||| || || || || | || || || || || |||||||| Sbjct 86476 CCTCCAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAAATTTGCATAGT 86425 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||| || | ||| || || || ||||||||||| || Sbjct 87338 CCACCACGGAGACGGAGGACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAATCAGAC 87279 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||||| |||| |||||||| || |||||||| || | |||||||| || | || Sbjct 87278 AAGGTGCGGCCGTCTTCCAATTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGGA 87219 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || || || |||| ||| | || |||| ||||| || Sbjct 87218 ATGCCTTCCTTGTCTTGGATCTTTTGCTT-GACATTGTCGATGGAGTCGGACGATTCGAC 87160 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || |||||||||||||| Sbjct 87159 CTCCAAAGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 87112 >seq56 Length=224513 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| ||||| ||||||||||| || || ||||| | || |||||||| || |||||||| Sbjct 32462 CTCCTTTTGGATGTTGTAATCCGACAGCGTGCGGCCATCCTCCAATTGCTTGCCGGCAAA 32521 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | || |||||||| |||| | ||| || ||||| || || || ||| |||| Sbjct 32522 GATGAGTCGTTGCTGATCAGGCGGAATACCCTCCTTGTCTTGGATCTTTTGCTTC-ACAT 32580 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || | | || ||||| || |||| ||||| || || || || | ||| || | Sbjct 32581 TATCAATTGAATCCGACGATTCAACCTCAAGTGTGATGGTCTTGCCAGTGAGCGTCTTGA 32640 Query 33737 CAAAGATCTGCAT 33749 | ||||| ||||| Sbjct 32641 CGAAGATTTGCAT 32653 >seq30 Length=460931 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || || || || ||||| ||||||||||| || Sbjct 195973 ACCACCACGGAGACGGAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAATCAGA 196032 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| | || |||||||| || |||||||| || | |||||||| || | || Sbjct 196033 CAAGGTGCGGCCATCTTCCAATTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGAGG 196092 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| ||||| || || || || |||| || | || || || || | Sbjct 196093 GATGCCTTCCTTGTCCTGGATCTTTTGCTT-GACATTATCAATGGAATCCGACGACTCGA 196151 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | |||||| || || || || || || || ||||||||||||||| Sbjct 196152 CCTCGAGCGTGATGGTCTTGCCAGTCAAAGTCTTAACAAAGATCTGCATA 196201 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||| || || ||| || ||||| |||||||| ||||| Sbjct 195518 CCACCGCGGAGACGCAGGACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCGGAC 195577 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || || | || || |||||||| || | |||||||| || | || Sbjct 195578 AGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCGGGAGGG 195637 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| ||||| || || || || | ||| ||| | || || || || || Sbjct 195638 ATACCTTCCTTGTCCTGGATCTTTTGCTTGA-CATTGTCGATGGAATCCGACGACTCGAC 195696 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || || || || ||||||||||||||| Sbjct 195697 CTCGAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCATA 195745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703403094080