Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq45 107 5e-18 seq30 104 6e-17 seq56 100 7e-16 seq1 93.3 1e-13 seq94 86.0 1e-11 >seq45 Length=303593 Score = 107 bits (118), Expect = 5e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | || || || || ||||||||||| || ||| || ||| Sbjct 87115 CAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACTTTGGAGGTCGAATCGTCCGAC 87174 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || ||||||||||| ||||| || ||||| ||| || ||| || Sbjct 87175 TCCATCGACAATGTCAAGCAAAAGATCCAAGACAAGGAAGGCATTCCCCCCGACCAGCAG 87234 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| ||||| ||||| |||||||| || | || ||| | ||||||||| || Sbjct 87235 CGCCTCATCTTTGCCGGCAAGCAATTGGAAGACGGCCGCACCTTGTCTGATTACAACATC 87294 Query 206353 CAGAAAGAGTCTAC 206366 ||||| || || || Sbjct 87295 CAGAAGGAATCCAC 87308 Score = 84.2 bits (92), Expect = 5e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| |||||||| || || || ||||| ||||| ||||| || || Sbjct 86659 CAGATTTTCGTCAAGACGCTCACTGGCAAGACCATCACCTTGGAGGTGGAGTCGTCCGAT 86718 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || ||||||||||| ||||| || ||||| || || ||| || Sbjct 86719 TCCATCGACAATGTCAAGCAAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAGCAG 86778 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || |||||||| |||||| | || ||||| | || | | || |||||| || Sbjct 86779 CGCCTCATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCTCTGACTACAACATC 86838 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 || || || || || || ||| Sbjct 86839 CAAAAGGAATCCACGCTCCAC 86859 Score = 84.2 bits (92), Expect = 5e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | || || || || ||||||||||| || ||| || || Sbjct 87343 CAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACTTTGGAGGTCGAATCGTCCGAT 87402 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || ||||||||||| ||||| || ||||| || || ||| || Sbjct 87403 TCCATCGACAATGTCAAGCAAAAGATCCAAGACAAGGAAGGCATCCCTCCCGACCAACAG 87462 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| ||||| || || |||||||| || | || | |||| |||||| || Sbjct 87463 CGCCTCATCTTTGCCGGCAAACAATTGGAAGACGGCCGCACGCTTTCCGACTACAACATC 87522 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 || || || || || || ||| Sbjct 87523 CAAAAGGAATCCACGCTCCAC 87543 >seq30 Length=460931 Score = 104 bits (114), Expect = 6e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| |||||||| || || || |||||||||||||| ||| || || Sbjct 195969 CAAATCTTTGTCAAGACGCTCACTGGCAAGACCATCACTTTGGAAGTCGAATCGTCCGAT 195910 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || ||||||||||||||||| || ||||| ||| || ||| || Sbjct 195909 TCGATCGACAATGTCAAGCAAAAGATTCAAGACAAGGAAGGCATTCCCCCTGACCAGCAG 195850 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || |||||||| ||||| |||||||| || | || | | || |||||| | Sbjct 195849 CGCCTCATTTTCGCCGGCAAGCAATTGGAAGACGGCCGCACGCTCTCTGACTACAACATT 195790 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 || || ||||| || || || Sbjct 195789 CAAAAGGAGTCCACGCTGCA 195770 Score = 87.8 bits (96), Expect = 4e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| || || || |||||| |||| || || || ||| | | || Sbjct 196414 CAAGACTCTCACTGGCAAGACCATCACTCTGGAGGTCGAGTCGTCGGACTCTATTGACAA 196355 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||||||||||||||| || || || ||| || ||| || | |||||||| Sbjct 196354 TGTCAAGCAAAAGATTCAAGACAAGGAGGGTATTCCCCCCGACCAGCAGCGCCTTATCTT 196295 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||| |||||| | || ||||| | || || | || |||||| |||| || ||||| Sbjct 196294 TGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTGTCTGACTACAACATCCAAAAGGAGTC 196235 Query 206364 TAC 206366 || Sbjct 196234 CAC 196232 Score = 84.2 bits (92), Expect = 5e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||||||||| || || || ||||| || || ||| || | || ||||| Sbjct 196125 GTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCTCCCGACCAGCAGCGCCTCATCTTT 196066 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| ||||| ||||||||||| | || ||| | ||||||||| |||| || || ||| Sbjct 196065 GCCGGCAAGCAATTGGAAGATGGCCGCACCTTGTCTGATTACAACATCCAAAAGGAATCT 196006 Query 206365 ACTCTTCAC 206373 || || ||| Sbjct 196005 ACCCTCCAC 195997 >seq56 Length=224513 Score = 100 bits (110), Expect = 7e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| |||||||| || || || ||||| | || || ||| || || || | || Sbjct 32639 CAAGACGCTCACTGGCAAGACCATCACACTTGAGGTTGAATCGTCGGATTCAATTGATAA 32580 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||||||||| ||||| || || || ||| ||| || ||| |||| ||||| Sbjct 32579 TGTGAAGCAAAAGATCCAAGACAAGGAGGGTATTCCGCCTGATCAGCAACGACTCATCTT 32520 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||| ||||| ||||| ||||| | || || | ||||||||| |||| || ||||| Sbjct 32519 TGCCGGCAAGCAATTGGAGGATGGCCGCACGCTGTCGGATTACAACATCCAAAAGGAGTC 32460 Query 206364 TACTCTTCACCTTGT 206378 || | ||||| || Sbjct 32459 GACGTTGCACCTGGT 32445 >seq1 Length=1252801 Score = 93.3 bits (102), Expect = 1e-13 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||||||||| ||||| || ||||| ||| || ||| || | | |||||| Sbjct 333657 GTCAAGCAAAAGATCCAAGACAAGGAAGGTATTCCCCCCGACCAGCAGCGCTTGATCTTC 333598 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||||||||||| || | || ||| |||| |||||| ||||||| ||||| Sbjct 333597 GCTGGCAAGCAGTTGGAAGACGGCCGCACCTTGTCCGACTACAACATCCAGAAGGAGTCC 333538 Query 206365 ACTCTTCAC 206373 || || ||| Sbjct 333537 ACCCTCCAC 333529 >seq94 Length=66050 Score = 86.0 bits (94), Expect = 1e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 206222 AAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGC 206281 |||| |||||| | |||| || ||||||||||| ||||| || || || || | Sbjct 22973 AAAGCTCTGACTCTATCGACAATGTCAAGCAAAAGATCCAAGACAAGGAGGGCATCCCCC 22914 Query 206282 CGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCG 206341 | ||| || | | ||||||||||| ||||| ||||||||||| | || ||| | | Sbjct 22913 CTGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAATTGGAAGATGGCCGCACGTTGTCTG 22854 Query 206342 ATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 | |||||| |||| || || || ||||| ||| Sbjct 22853 ACTACAACATCCAAAAGGAATCGACTCTCCAC 22822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181818543830229