Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq61 230 2e-55 seq45 91.5 1e-13 seq30 91.5 1e-13 >seq61 Length=186913 Score = 230 bits (254), Expect = 2e-55 Identities = 979/1512 (65%), Gaps = 50/1512 (3%) Strand=Plus/Plus Query 146943 AGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCAT 147002 |||| | ||||| || ||||||| ||| | ||||| | ||||| ||||| ||||| Sbjct 183697 AGTGTAGGGCTCGAAGCACTCATTGAAGCCGAGCATTTGCGACGTGGAGGCGGTGGGCAT 183756 Query 147003 GTACGCCACCAACAATGAATTTCGCAGACCGTACGCACGGA--TGTTGTCCTTCAAAGTT 147060 | || || | |||||| || || | ||||| | || ||||| ||| | ||| Sbjct 183757 GGGGGCGACAAGCAATGAGTTGCGGACACCGTGCTGGGCGACCTGTTG--CTTGAGAGTG 183814 Query 147061 TGCCAGTCCCACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCC--TC 147118 ||| ||||| | | ||| |||||||||||||| |||||||||| | || | Sbjct 183815 GCCCAATCCCAAAGATCAGTGGGGGTCACGTTCCACATATCGTACTGGAAGATGCCCTTG 183874 Query 147119 GACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCG-CGCTGCGCCAATTCACAG 147177 ||| |||| ||||| | | || |||| || | | ||| |||||||||| | Sbjct 183875 GACA--CGGGGCTGCCTTCATAGGTCTCGTAGGGGCCTTGGACGC-GCGCCAATTCCATG 183931 Query 147178 CTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCT 147237 || ||| | || | | ||| |||||||| |||||| |||| || | | ||| Sbjct 183932 GATGTCTCCATGGCGGCGTGGTAAATGGTTTCAAAGATTTGAATGTTGAGCATCTTGGCT 183991 Query 147238 TCTTCGCTCTCGTAAGGCATA-CGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACC 147296 || || ||| | || ||| |||| |||| |||| || |||| |||||||| || Sbjct 183992 TCCTCCGAGTCGAATGG-ATAGCGCATGAGCATGAAGGTGTCAGCCAGGCCCTGGATGCC 184050 Query 147297 GACGCCGATAGGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT-ATGGGATAGTGGT 147355 | ||| || || || || |||| |||| || ||| | | ||| || | | Sbjct 184051 CAAGCCAATGGGGCGGTGGCGAAGGTTGGATCGCTCGGC-CTCAATGACGGGGTAATAAT 184109 Query 147356 TGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTG-AGTTTC 147414 || ||| || |||||||| | || ||| | || || | | | || | |||| Sbjct 184110 TGACATCGATGATCTTGTTCAAATTGCGCGTGATCACCTT-GACAACCTGGTGCAATTTC 184168 Query 147415 TCGAAATCATAAGTCCCGTCTTCGAC-ACGTACGCATTGGTTCACGGCGATAGACGCCAG 147473 | ||||||| | ||| | | ||| ||||| | ||| || || || |||| Sbjct 184169 TTGAAATCAAACGTCTTGCGGTTGACGACGTATGA--TGG--CAACGCAATGCTGGCCAA 184224 Query 147474 ATTGCAGACGGCCGTCTCTTCGGCG-TCGCTGTACTGCACGATTTCGGCGCACAGGTTGC 147532 ||||| ||||| |||| |||| | ||| ||| | || || || | ||||| |||| Sbjct 184225 GTTGCACACGGCAATCTCATCGGGGCTCGA-GTATTCGACAATCTCCGTGCACAAATTGC 184283 Query 147533 TGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGA 147592 ||||||| ||| || | || ||||| ||| ||| || ||||||||||| ||| | | Sbjct 184284 TGCATTTGATGGTGCCGAGGTTCTGCTGGTTGGATTTGCGGTTGCACGCGTCCTTGTACA 184343 Query 147593 GCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTATG-CAGGTCCTGC 147651 ||| |||| ||| |||||| || | || | || | || || | ||| Sbjct 184344 AGATGAACGGATTGCCCGTCTCGGTCTGGGCCTCGAGAATCG-CGTACCACAACTTTTGC 184402 Query 147652 GCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAAC 147711 || | | ||| || |||||||| ||||||||| || |||| ||| || Sbjct 184403 GCCTTGATCGTCTGGCGCGCACGGCCCTCCTTTTCGTACTTTTCAAACAAGGCCTCGAAT 184462 Query 147712 TCGTCGCCGTAGCAATCG-GCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACAT 147770 || ||||| | ||| |||| || | | || || || | |||||||| Sbjct 184463 TCATCGCCCCACACCTCGTGCAAATTGGGCGCCTCGTTGGGG-CAAAAGAGCGACCAGTC 184521 Query 147771 GTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATC 147830 | | | || | || || ||| |||| ||| |||||||| |||||||| | | ||| Sbjct 184522 GCCATTGGCCTCGACACGCTTCATGAACAAATCAGGCACCCAGAGCGCGTAAAACAAATC 184581 Query 147831 GCGCGCTTTGCAATCCTCGGCGCCCATGTT---GCGTTTCAAATTAAGCACGCTATAGAT 147887 |||||| | || || ||||| ||| ||| ||| | | | | | | || Sbjct 184582 GCGCGCGCGGATCTCGTCCTTGCCCACGTTCTTGCG---CAATTCCAAAAAGGTGAAAAT 184638 Query 147888 GTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTT---CCGCCCTG 147944 |||||||||||| || || | ||| | ||| | |||||| ||||| || || || Sbjct 184639 GTCGGCGTGCCAAGGCTCGAGGTACATGGCAAACGCACCCGGGCGCTTGTTCCCTCCTTG 184698 Query 147945 GTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGT 148004 ||| || | |||| || ||||||| |||||||||| ||| || ||| || | || || Sbjct 184699 GTCAACGTAGCGCGCCGTGTTGTTGAACACGCGCAGCATAGGCAACAGACCATTGGCCGT 184758 Query 148005 GCCGTTGGTG---GAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCC 148061 ||| |||||| | | || | || ||| || | || | | ||| | ||| | ||| Sbjct 184759 GCCATTGGTGCCGGCAATGTACGAGC--CCGTGG-CGCGGATGTTGTGGATGTTCAAGCC 184815 Query 148062 AATGCCGCCG-CCGTACTTTGATATG---GCAGCGCAATCGCCCAATGTCGTGTAGATGC 148117 |||||||||| |||| ||| || || ||| ||| | | | ||| |||||||| Sbjct 184816 AATGCCGCCGGCCGT-CTTGGAGATTTGCGCACAGCACTTGAGC---GTCTCGTAGATGC 184871 Query 148118 CGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCG 148177 | || || ||| | || | ||||| || ||||| |||||||||| ||| Sbjct 184872 CCTCAATCGAGTCCTCCTTCATAGTCAGCAAGAAGCACGACGACATTTGCGGGCGAGGCG 184931 Query 148178 TTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGAT 148237 | || || ||| | || || ||||||||||| || ||| | ||| | | | Sbjct 184932 TGCCGGCATTGAACAACGTCGGGCTCGCGTGCGTGAAGAATCGCTCCGACATGAGCTGGT 184991 Query 148238 ACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCA 148297 ||||||| | |||| | || ||||| ||||| || || || | || || ||||||| || Sbjct 184992 ACGTCTCCAAAGCGGCATCAATGTCTTCGCCATGGATACCAACAGCCACACGCATGATCA 185051 Query 148298 TGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGG 148357 ||||| || || || || || | ||||||||||| | |||| | ||||| | Sbjct 185052 AATGCTGCGGACGCTCCGCCACCTTGCCATTGATCTTGAGCAAATATGAACGCTCGAGCG 185111 Query 148358 TTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCGCATCTAGTG 148417 | ||| ||||||| || ||||| |||| || | || || ||| |||| || || Sbjct 185112 TCTTGAAACCAAAATAGTTGTAGCCAAAGTCACGATCATAGATGATCGCCGAATTGAGCC 185171 Query 148418 TCTCAGCATGGG 148429 ||||||| || Sbjct 185172 GGTCAGCATTGG 185183 >seq45 Length=303593 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| |||||| || | | ||||| ||||| ||||||||||| || || || Sbjct 86642 CGCAGAACCAAGTGCAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAGCGTGCGGCCG 86583 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| || |||| | | || | |||||| ||||| || || ||||| || || Sbjct 86582 TCCTCCAGCTGCTTGCCGGCAAAAATCAAACGCTGCTGATCGGGGGGAATGCCCTCCTTG 86523 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| || || | | || | || ||||| || ||| || || | || | Sbjct 86522 TCTTGGATTTTCTGCTTGACGTTGTCGATAGAATCGGACGACTCGACCTCCAGAGTGATG 86463 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||| ||||| || | |||||| ||||| Sbjct 86462 GTCTTGCCAGTGAGAGTCTTGACGAAAATTTGCAT 86428 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || ||||| ||||||||||| | || || ||| |||||||| || |||| Sbjct 86849 GATTCCTTTTGGATGTTGTAGTCAGAGAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCG 86790 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || || ||||| || || ||||| |||||||| || || || ||||| || | Sbjct 86789 AAAATGAGGCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTTGCTTGACA 86730 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | ||||| || |||||| || | || | || || ||||| || || || Sbjct 86729 TTGTCGATGGAATCGGACGACTCCACCTCCAAGGTGATGGTCTTGCCAGTGAGCGTCTTG 86670 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 86669 ACGAAAATCTGCAT 86656 >seq30 Length=460931 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||||| || | | || || ||||| |||||||||||| || || || | Sbjct 195530 CGCAGGACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCGGACAGCGTGCGGCCA 195589 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || |||||||| || |||| | |||| || ||||| || || ||||| || ||||| || Sbjct 195590 TCCTCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCGGGAGGGATACCTTCCTTG 195649 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || ||||| || | | || | | ||| | || ||| || |||| || | Sbjct 195650 TCCTGGATCTTTTGCTTGACATTGTCGATGGAATCCGACGACTCGACCTCGAGGGTGATG 195709 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||||| ||| || | || |||||||| Sbjct 195710 GTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 195744 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||| ||||||||||| || || || ||| |||||||| || |||| | Sbjct 196235 GACTCCTTTTGGATGTTGTAGTCAGACAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCA 196294 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || || || || || || || || || ||| ||||| || | Sbjct 196295 AAGATAAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCTTGAATCTTTTGCTTGACA 196354 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | || ||| || || | || | || || ||||| ||||| || Sbjct 196355 TTGTCAATAGAGTCCGACGACTCGACCTCCAGAGTGATGGTCTTGCCAGTGAGAGTCTTG 196414 Query 132110 ATGAAAATCTGCATG 132124 | |||||| |||||| Sbjct 196415 ACGAAAATTTGCATG 196429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476610312311640