Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq61 215 7e-50 seq11 194 2e-43 seq5 176 6e-38 seq33 167 3e-35 seq65 136 6e-26 seq8 93.3 6e-13 >seq61 Length=186913 Score = 215 bits (238), Expect = 7e-50 Identities = 227/299 (76%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 259883 ACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCC 259942 || ||| || ||||||| ||| || ||||| |||| || ||| | || |||||| Sbjct 184995 ACGTACCAGCTCATGTCGGAGCGATTCTTCACGCACGCGAGCCCGACGTTGTTCAATGCC 184936 Query 259943 GGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATC 260002 |||||||| |||||||| | ||||||||||| || || ||||||| || ||||| Sbjct 184935 GGCACGCCTCGCCCGCAAATGTCGTCGTGCTTCTTGCTGACTATGAAGGAGGACTCGATT 184876 Query 260003 GAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATC 260062 ||||||||||| || ||||||||| || |||| ||||||||| ||||||||||||| Sbjct 184875 GAGGGCATCTACGAGACGCTCAAGTGCTGTGCGCAAATCTCCAAGACGGCCGGCGGCATT 184816 Query 260063 GGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAG 260122 || || | ||||| | |||||| ||||| | ||| | || |||||||| ||| | Sbjct 184815 GGCTTGAACATCCACAACATCCGCGCCACGGGCTCGTACATTGCCGGCACCAATGGCACG 184756 Query 260123 TCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCA 260181 |||| || || |||| ||||| ||||| || ||| |||||||||||||||| ||||| Sbjct 184755 GCCAATGGTCTGTTGCCTATGCTGCGCGTGTTCAACAACACGGCGCGCTACGTTGACCA 184697 Score = 100 bits (110), Expect = 4e-15 Identities = 288/442 (65%), Gaps = 24/442 (5%) Strand=Plus/Minus Query 261796 CAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTCATCAACTG 261855 ||||||| ||| || |||||| ||||| || || |||||||||||| | ||| || Sbjct 184687 CAAGCGCCCGGGTGCGTTTGCCATGTACCTCGAGCCTTGGCACGCCGACATTTTCACCTT 184628 Query 261856 GCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGCGATCTCTT 261915 |||| | |||||| ||||||| | ||| ||| |||||||||| | || Sbjct 184627 TTTGGAATTGCGCAAGAACGTGGGCAAGGACG----AGATCCG--CGCGCGCGATTTGTT 184574 Query 261916 TTACGGCCTGTGGACGTGC--GACCTGTTTATGCGCCGCATGGTGACCGGCCGCGACTGG 261973 ||||| || ||| |||| || |||| ||| || | | | || |||||||| Sbjct 184573 TTACGCGCTCTGG--GTGCCTGATTTGTTCATGAAGCGTGTCGAGGCCAATGGCGACTGG 184516 Query 261974 TCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCG--GCCTTTG 262031 |||||||||||||| |||||||||| ||||||| | | ||| ||| | || | Sbjct 184515 TCGCTCTTTTGCCCCAACGAGGCGCCCAATTTGCACGA--GGTGTGGGGCGATGAATTCG 184458 Query 262032 ACGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNCGCG---GACCGTCGTGCCCGCAC 262088 | ||| | | ||| |||| ||| || | || | Sbjct 184457 AGGCCTTGTTTGAAAAGTACGAAAAGGAGGGCCGTGCGCGCCAGACGATCAAG---GCGC 184401 Query 262089 GACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCT 262148 | || | |||| || ||| ||| |||||| | |||||| |||| || | ||| | | Sbjct 184400 AAAAGTTGTGGTACGCGATTCTCGAGGCCCAGACCGAGACGGGCAATCCGTTCATCTTGT 184341 Query 262149 ACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAGGC-- 262206 |||||||||| ||||| | ||||||||||||||| ||||||| || | || Sbjct 184340 ACAAGGACGCGTGCAACCGCAAATCCAACCAGCAGAACCTCGGCACCA--TCAAATGCAG 184283 Query 262207 CAACCTGTGCACCGAGATCGTC 262228 ||| ||||||| ||||| ||| Sbjct 184282 CAATTTGTGCACGGAGATTGTC 184261 >seq11 Length=680710 Score = 194 bits (214), Expect = 2e-43 Identities = 190/244 (78%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 |||||||| | ||||||||||||||||||||||| ||||| || | | ||| Sbjct 368791 TACTCGTCGTACATCTACAAGGTGCTCAAGCAGGTCCACCCTGACACTGGT-----ATC- 368738 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||||||||| ||||||| ||| | |||||||||||||| ||||| | || ||||| | | Sbjct 368737 TCCAACAAGGCCATGTCCATCCTCAACTCGTTTGTCAATGACATCTTTGAGCGCATTGCC 368678 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 ||||||||| || || || |||||||||| ||| ||| | ||||||||||| Sbjct 368677 ACCGAGGCCTCCAAGCTCGCTGCCTACAACAAGCGCTCCACCATCTCCTCGCGCGAGATC 368618 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 ||||||||||| ||| ||||| | | ||| ||| |||||| |||||||||||| || ||| Sbjct 368617 CAGACCGCCGTCCGCTTGATCCTCCCCGGTGAATTGGCCAAGCACGCCGTCTCGGAAGGC 368558 Query 725139 ACCA 725142 |||| Sbjct 368557 ACCA 368554 >seq5 Length=887111 Score = 176 bits (194), Expect = 6e-38 Identities = 186/244 (76%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | ||||||||||||||||||||||| |||||| || | | ||| Sbjct 5885 TACTCCTCGTACATCTACAAGGTGCTCAAGCAGGTCCACCCCGACACTGGT-----ATC- 5938 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||||||||| ||||||| ||| | ||||| |||||||| ||||| | || ||||||| | Sbjct 5939 TCCAACAAGGCCATGTCCATCCTCAACTCCTTTGTCAATGACATCTTTGAGCGCATCGCC 5998 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 ||||||||| || || || |||||||||| ||| ||| | | ||||||||| Sbjct 5999 ACCGAGGCCTCCAAGCTCGCTGCCTACAACAAGCGCTCCACCATCTCCTCTCGCGAGATC 6058 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 ||||| || || ||| ||||| | | || ||| |||||| |||||||||||| || ||| Sbjct 6059 CAGACTGCTGTCCGCTTGATCCTCCCTGGTGAATTGGCCAAGCACGCCGTCTCGGAAGGC 6118 Query 725139 ACCA 725142 |||| Sbjct 6119 ACCA 6122 >seq33 Length=455653 Score = 167 bits (184), Expect = 3e-35 Identities = 220/296 (74%), Gaps = 7/296 (2%) Strand=Plus/Minus Query 1456448 GGTTTGCACTGTGACTTTGCCTGTCTGCTCTACA-CGATGCTCGTCAACAAGCCGTCGAC 1456506 ||||||||| |||||||| || ||||||| | || || ||||| ||| || | Sbjct 391102 GGTTTGCACACGGACTTTGCGTGCCTGCTCTTTGGCCATCTGCG-CAACACGCCTTCCAA 391044 Query 1456507 CGAC-GTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCG 1456565 ||| ||| | | | |||||| |||||||||| |||| ||| |||| || | | || Sbjct 391043 TGACCGTGTGCGCG-ATATCATCACCGAGGCCGTCAAGATTGAGCAAGAATTCCTGACCG 390985 Query 1456566 AGTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAA 1456625 | ||||||| || |||||||| ||||||||| ||| |||||||||||| ||||||||| Sbjct 390984 ACGCGCTGCCTGTCGCGCTCATTGGCATGAACTCCAA-GCTCATGTGCCAATACATTGAA 390926 Query 1456626 TTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCA 1456685 ||| || || ||||||||||||| || || ||| ||| ||||||||| | | ||| Sbjct 390925 TTT-GTTGCGGACCGCCTGCTCGTTGCTCTTGGCCA-GGACAAGCACTACAAGGCAACCA 390868 Query 1456686 ACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 | || || | ||||| | ||||||||| ||||||||||||| || || ||| Sbjct 390867 ATCCCTTTGACTTTATGGACCTCATCTCGCTCCAGGGCAAGACCAATTTCTTTGAG 390812 >seq65 Length=159763 Score = 136 bits (150), Expect = 6e-26 Identities = 174/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 263172 CGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTGATAT 263231 ||| |||||||| || | |||||| ||||||||| | | | || |||| ||| || || Sbjct 94609 CGACCTCAAGGCGCTGTACAAGACGGTGTGGGAGATCTCGCAGCGCGTGATCATCGACAT 94550 Query 263232 GGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCGA 263291 ||| || ||||||| | | | |||||||| || || | ||||||| | | ||| Sbjct 94549 GGCTGCGGACCGCGGCGCGTTCATTGACCAGAGTCAATCCATGAACCTGTTCAGCAGCGA 94490 Query 263292 CCCGACGGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAAGAC 263351 ||| || | | | ||||||| |||||| ||||| ||| ||||||||||| Sbjct 94489 CCCCACCGTTGGCAAGCTCACGTCCATGCACTTTTATGCCTGGAAAAAGGGCCTCAAGAC 94430 Query 263352 TGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCGATCA 263411 ||||||||||| |||||| |||| ||||| | | ||||||| | ||||||||||| || Sbjct 94429 GGGCATGTACTACCTGCGCTCCCGCCCCGCCGTCGACGCCATCAAGTTCACCGTCGACCA 94370 >seq8 Length=689307 Score = 93.3 bits (102), Expect = 6e-13 Identities = 126/173 (73%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 165748 TGGCAGACCTGGTCACGTGGGGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACC 165807 |||| |||||| || ||||||| || | ||||| || ||||||||| ||| |||| | Sbjct 114520 TGGCGGACCTGATCTCGTGGGGTGCAATTGGTGCACGGACCACCGAGTCACAGCTGCATC 114579 Query 165808 GCGAGATGGCGTCGGCGCTGC-CGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCAGC 165866 | ||| | ||||||| || || || | |||||||| ||||| || |||||||||||| Sbjct 114580 GTGAGCTCGCGTCGG-GCAGCTCGTTCCCCATTGGATTCAAGAATGGCACCGACGGCAAT 114638 Query 165867 GTGGCGACGGCCCTCGATGCCGTGCGCACTGCCGCCCAGCCACACACCTTTCT 165919 || | | || ||||||| | | ||| | || || |||||| ||| || Sbjct 114639 CTGACCATTGCGCTCGATGGCATCCGCGCAGCTTCCGTTCCACACCACTTCCT 114691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177796828676138