Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq61 159 3e-34 seq56 93.3 4e-14 seq30 86.0 5e-12 >seq61 Length=186913 Score = 159 bits (176), Expect = 3e-34 Identities = 468/709 (66%), Gaps = 19/709 (3%) Strand=Plus/Plus Query 131546 TTTTCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCCAAACGAACT-GTCCAAATTGGG 131604 |||||||| ||||| |||| | || || | | ||| || | || || ||||||||| Sbjct 184433 TTTTCGTACTTTTCAAACAAGGCCTCGAATTCATCGCCCCAC-ACCTCGTGCAAATTGGG 184491 Query 131605 ACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAA 131664 ||| |||| || | |||||||| |||| || || || |||||||| ||||| Sbjct 184492 CGCCTCGTTGGGGCAAAAGAGCGACCAGTCGCCATTGGCCTCGACACGCTTCATGAACAA 184551 Query 131665 ATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAt 131724 ||| |||||||| | |||||| |||| ||| | || |||| || | |||| | Sbjct 184552 ATCAGGCACCCAGAGCGCGTAAAACAAATCGCGCGCGCGGATCTCGTCCTTGCCCACGTT 184611 Query 131725 ttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCAT 131784 || ||| | |||||| |||||||| || ||||| || || | |||| || | Sbjct 184612 CTTGCGCAATTCCAAAAAGGTGAAAATGTCGGCGTGCCAAGGCTCGAGGTACATGGCAAA 184671 Query 131785 TGCGCCTTTGCGCTTA---CCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCG 131841 || || |||||| || ||||| | ||| | || || |||||||| | ||||| Sbjct 184672 CGCACCCGGGCGCTTGTTCCCTCCTTGGTCAACGTAGCGCGCCGTGTTGTTGAACACGCG 184731 Query 131842 CAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGC 131901 || ||| ||| || ||| ||||| | |||||||||| |||||| ||| |||| Sbjct 184732 CAGCATAGGCAACAGACCATTGGCCGTGCCATTGGTGCCGGCAATGTACGAGCCCGTGGC 184791 Query 131902 TCTGATTTTGTGAACGTTGAGTCCAATACCTCCG-CCGTATTTAGAGATTAGTGC---GC 131957 | ||| ||||| | ||| | ||||| || ||| |||| || |||||| | || || Sbjct 184792 GCGGATGTTGTGGATGTTCAAGCCAATGCCGCCGGCCGTCTTG-GAGATTTGCGCACAGC 184850 Query 131958 ATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAAT-GTCGACTAAAAAG 132016 | ||| || || | ||||| || || | |||| | || ||| | || ||| Sbjct 184851 ACTTG---AGCGTCTCGTAGATGCCCTCAATCGAGTCCTCCTTCATAGTCAGC-AAGAAG 184906 Query 132017 CAAGAGGACAACTGTTGGTGAAATGTGCCGGCTGAAAACAATGTGGGGCTGGCGTGTGTA 132076 || || |||| || || || |||||||| ||||| || ||||| ||||| || Sbjct 184907 CACGACGACATTTGCGGGCGAGGCGTGCCGGCATTGAACAACGTCGGGCTCGCGTGCGTG 184966 Query 132077 AAAAGTTTTTTGGCCATGCACCGATACGATTGTATAGCGGACTCGATATCGCCCAGATGT 132136 || | | | | |||| | | |||| | | ||||| || || || | ||| Sbjct 184967 AAGAATCGCTCCGACATGAGCTGGTACGTCTCCAAAGCGGCATCAATGTCTTCGCCATGG 185026 Query 132137 ATGGTCAATGCGACCCGCATGTACATGTGTTGAATGCGCTCGGCCGTTTTGCCGTCGATT 132196 || | || || |||||| || || || ||||| ||| ||||| | ||| Sbjct 185027 ATACCAACAGCCACACGCATGATCAAATGCTGCGGACGCTCCGCCACCTTGCCATTGATC 185086 Query 132197 TTGATCAAATA--ACCGTTTTCCAAAGTTTTGAAACCAAAATATTTGTA 132243 |||| |||||| | || | | | || |||||||||||||| ||||| Sbjct 185087 TTGAGCAAATATGAACGCT--CGAGCGTCTTGAAACCAAAATAGTTGTA 185133 >seq56 Length=224513 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| |||||||| |||| |||| || ||||| || || ||||| || ||||| || Sbjct 32425 TGCCGCCGCGCAATCGCAGCACCAGGTGCAACGTCGACTCCTTTTGGATGTTGTAATCCG 32484 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || |||| | || || | || || ||||| | ||||| || || ||||| |||| Sbjct 32485 ACAGCGTGCGGCCATCCTCCAATTGCTTGCCGGCAAAGATGAGTCGTTGCTGATCAGGCG 32544 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||| || || |||||| | |||| | || | | || | | ||||| Sbjct 32545 GAATACCCTCCTTGTCTTGGATCTTTTGCTTCACATTATCAATTGAATCCGACGATTCAA 32604 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | ||||| || || || || || ||||||||||| Sbjct 32605 CCTCAAGTGTGATGGTCTTGCCAGTGAGCGTCTTGACGAAGATTTGCAT 32653 >seq30 Length=460931 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | ||| || || |||||||| |||||||| | |||| ||||||| Sbjct 195764 ACCAAATGCAGCGTGGACTCCTTTTGAATGTTGTAGTCAGAGAGCGTGCGGCCGTCTTCC 195823 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | || || |||||| ||||||| ||||| || || || || | || || || || Sbjct 195824 AATTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGA 195883 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| | || | | || | | || | | ||| ||||| | ||| || | ||| Sbjct 195884 ATCTTTTGCTTGACATTGTCGATCGAATCGGACGATTCGACTTCCAAAGTGATGGTCTTG 195943 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || || ||||||||||||||| Sbjct 195944 CCAGTGAGCGTCTTGACAAAGATTTGCATA 195973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424933628345688